Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13816 | Canola | cytosol | 78.49 | 73.5 |
| Bra031189.1-P | Field mustard | nucleus | 78.11 | 65.92 |
| CDX99593 | Canola | endoplasmic reticulum, golgi | 66.79 | 51.6 |
| CDY15894 | Canola | endoplasmic reticulum | 66.79 | 48.9 |
| AT2G21430.1 | Thale cress | endoplasmic reticulum | 64.53 | 47.37 |
| CDY41960 | Canola | endoplasmic reticulum, extracellular, vacuole | 63.4 | 45.78 |
| CDY71205 | Canola | vacuole | 62.64 | 45.11 |
| CDX90310 | Canola | vacuole | 62.64 | 44.99 |
| KRH29385 | Soybean | extracellular | 59.25 | 43.25 |
| KRH24406 | Soybean | extracellular | 58.87 | 42.74 |
| VIT_03s0038g00280.t01 | Wine grape | endoplasmic reticulum | 59.25 | 41.64 |
| PGSC0003DMT400079506 | Potato | endoplasmic reticulum, extracellular, vacuole | 57.36 | 41.3 |
| Solyc01g110110.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 57.36 | 41.19 |
| CDY32227 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.47 | 39.95 |
| CDY34441 | Canola | endoplasmic reticulum | 55.09 | 39.67 |
| CDY09707 | Canola | endoplasmic reticulum, extracellular | 53.21 | 38.52 |
| CDX90537 | Canola | endoplasmic reticulum | 53.21 | 38.52 |
| CDY56961 | Canola | endoplasmic reticulum | 46.42 | 33.79 |
| CDX73424 | Canola | extracellular | 46.04 | 33.52 |
| CDY42605 | Canola | plastid | 22.26 | 27.83 |
| CDY09216 | Canola | vacuole | 31.32 | 23.12 |
| CDY14798 | Canola | extracellular | 10.57 | 22.95 |
| CDY31550 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.94 | 22.84 |
| CDY09213 | Canola | vacuole | 30.94 | 22.84 |
| CDX80173 | Canola | endoplasmic reticulum | 30.57 | 22.63 |
| CDY19784 | Canola | cytosol, nucleus, plastid | 19.62 | 21.67 |
| CDX71035 | Canola | vacuole | 25.66 | 19.83 |
| CDX88753 | Canola | vacuole | 25.66 | 19.48 |
| CDY64994 | Canola | cytosol, nucleus, vacuole | 17.36 | 18.55 |
| CDX71045 | Canola | endoplasmic reticulum | 24.91 | 18.23 |
| CDX85150 | Canola | extracellular, golgi, vacuole | 18.87 | 14.66 |
| CDY61859 | Canola | extracellular, golgi, vacuole | 20.0 | 14.56 |
| CDY07129 | Canola | extracellular | 19.62 | 14.53 |
| CDY58223 | Canola | vacuole | 19.25 | 14.25 |
| CDY64824 | Canola | cytosol, mitochondrion, vacuole | 9.06 | 13.71 |
| CDX88755 | Canola | extracellular, plasma membrane, vacuole | 20.0 | 12.96 |
| CDY38163 | Canola | golgi, vacuole | 3.4 | 5.62 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078CY22 | EnsemblPlants:CDX82031 | ProteinID:CDX82031 | ProteinID:CDX82031.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 |
| GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00137013001 | PFAM:PF00112 | ScanProsite:PS00639 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF338 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | SMART:SM00645 |
| SUPFAM:SSF54001 | TMHMM:TMhelix | UniParc:UPI0004EE45D6 | SEG:seg | : | : |
Description
BnaC08g35700D
Coordinates
chrLK031826:-:1963235..1964886
Molecular Weight (calculated)
29897.5 Da
IEP (calculated)
8.471
GRAVY (calculated)
-0.319
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLNRSQKSC RGRITSLCSK RRYGKVYNSL EEHQHRFWIF RSNFMRATTR HQRMDPFARH GHADQAPILD TKNLPGDFDW RDRGAVTPVK NQVNSSASVN
101: NSLLILWFAF LFVPVWFFTS LCFGSIRCDP QVEGLCDSGC NGGLMNIASE YTFETGGLMR EEDYPYTGTT DVGICKFDKS KIVSNFSVVS SNEDQIAANL
201: VKNGPLAVAI NSAYMQTYVG GVLCPYMCSR SLNHGVLLVG YGSEGSRFKE KPYWIIKNSW GETWG
101: NSLLILWFAF LFVPVWFFTS LCFGSIRCDP QVEGLCDSGC NGGLMNIASE YTFETGGLMR EEDYPYTGTT DVGICKFDKS KIVSNFSVVS SNEDQIAANL
201: VKNGPLAVAI NSAYMQTYVG GVLCPYMCSR SLNHGVLLVG YGSEGSRFKE KPYWIIKNSW GETWG
001: MDYHLRVLFS VSLIFVFVSV SVCGDEDVLI RQVVDETEPK VLSSEDHFTL FKKKFGKVYG SIEEHYYRFS VFKANLLRAM RHQKMDPSAR HGVTQFSDLT
101: RSEFRRKHLG VKGGFKLPKD ANQAPILPTQ NLPEEFDWRD RGAVTPVKNQ GSCGSCWSFS TTGALEGAHF LATGKLVSLS EQQLVDCDHE CDPEEEGSCD
201: SGCNGGLMNS AFEYTLKTGG LMREKDYPYT GTDGGSCKLD RSKIVASVSN FSVVSINEDQ IAANLIKNGP LAVAINAAYM QTYIGGVSCP YICSRRLNHG
301: VLLVGYGSAG FSQARLKEKP YWIIKNSWGE SWGENGFYKI CKGRNICGVD SLVSTVAATT S
101: RSEFRRKHLG VKGGFKLPKD ANQAPILPTQ NLPEEFDWRD RGAVTPVKNQ GSCGSCWSFS TTGALEGAHF LATGKLVSLS EQQLVDCDHE CDPEEEGSCD
201: SGCNGGLMNS AFEYTLKTGG LMREKDYPYT GTDGGSCKLD RSKIVASVSN FSVVSINEDQ IAANLIKNGP LAVAINAAYM QTYIGGVSCP YICSRRLNHG
301: VLLVGYGSAG FSQARLKEKP YWIIKNSWGE SWGENGFYKI CKGRNICGVD SLVSTVAATT S
Arabidopsis Description
RD19BProbable cysteine protease RD19B [Source:UniProtKB/Swiss-Prot;Acc:P43295]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.