Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90310 | Canola | vacuole | 95.38 | 95.12 |
| CDY41960 | Canola | endoplasmic reticulum, extracellular, vacuole | 89.67 | 89.92 |
| AT4G39090.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 88.59 | 88.59 |
| CDX99593 | Canola | endoplasmic reticulum, golgi | 75.0 | 80.47 |
| CDY15894 | Canola | endoplasmic reticulum | 78.26 | 79.56 |
| Bra010706.1-P | Field mustard | vacuole | 95.38 | 78.17 |
| CDY13816 | Canola | cytosol | 56.52 | 73.5 |
| PGSC0003DMT400079506 | Potato | endoplasmic reticulum, extracellular, vacuole | 73.1 | 73.1 |
| Solyc01g110110.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 73.1 | 72.9 |
| KRH29385 | Soybean | extracellular | 70.92 | 71.9 |
| KRH24406 | Soybean | extracellular | 70.65 | 71.23 |
| VIT_03s0038g00280.t01 | Wine grape | endoplasmic reticulum | 72.55 | 70.82 |
| CDY32227 | Canola | endoplasmic reticulum, extracellular, vacuole | 68.21 | 68.21 |
| CDY34441 | Canola | endoplasmic reticulum | 67.93 | 67.93 |
| CDX90537 | Canola | endoplasmic reticulum | 64.67 | 65.03 |
| CDY09707 | Canola | endoplasmic reticulum, extracellular | 64.4 | 64.75 |
| CDX82031 | Canola | nucleus | 45.11 | 62.64 |
| CDY14798 | Canola | extracellular | 19.57 | 59.02 |
| CDY42605 | Canola | plastid | 31.52 | 54.72 |
| CDX73424 | Canola | extracellular | 50.27 | 50.82 |
| CDY56961 | Canola | endoplasmic reticulum | 50.27 | 50.82 |
| CDY09216 | Canola | vacuole | 38.04 | 39.0 |
| CDY09213 | Canola | vacuole | 37.77 | 38.72 |
| CDX80173 | Canola | endoplasmic reticulum | 37.23 | 38.27 |
| CDY31550 | Canola | endoplasmic reticulum, extracellular, vacuole | 36.96 | 37.88 |
| CDY19784 | Canola | cytosol, nucleus, plastid | 23.37 | 35.83 |
| CDX88753 | Canola | vacuole | 32.34 | 34.1 |
| CDX71035 | Canola | vacuole | 29.08 | 31.2 |
| CDX71045 | Canola | endoplasmic reticulum | 29.35 | 29.83 |
| CDY64994 | Canola | cytosol, nucleus, vacuole | 18.75 | 27.82 |
| CDX85150 | Canola | extracellular, golgi, vacuole | 22.01 | 23.75 |
| CDY61859 | Canola | extracellular, golgi, vacuole | 22.83 | 23.08 |
| CDY58223 | Canola | vacuole | 21.74 | 22.35 |
| CDY07129 | Canola | extracellular | 21.47 | 22.07 |
| CDX88755 | Canola | extracellular, plasma membrane, vacuole | 23.91 | 21.52 |
| CDY64824 | Canola | cytosol, mitochondrion, vacuole | 8.97 | 18.86 |
| CDY38163 | Canola | golgi, vacuole | 6.79 | 15.62 |
Protein Annotations
| MapMan:19.4.1.1 | Gene3D:3.90.70.10 | GO:A0A078JXN7 | UniProt:A0A078JXN7 | EnsemblPlants:CDY71205 | ProteinID:CDY71205 |
| ProteinID:CDY71205.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00012105001 | PFAM:PF00112 |
| PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF519 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A |
| InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM |
| UniParc:UPI0001B64140 | : | : | : | : | : |
Description
BnaCnng71840DBnaCnng71840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXN7]
Coordinates
chrLK044899:-:441..2417
Molecular Weight (calculated)
40144.5 Da
IEP (calculated)
7.654
GRAVY (calculated)
-0.293
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRLKLSLSV FALLFIVVSA SSDGNEGDDL VIKQVVDGGA DPNVLSSEDH FSLFKKKFGK VYASREEHDY RFSVFKSNLR RARRHQKLDP SARHGVTQFS
101: DLTRSEFKRK HLGVKGGFKL PKDANKAPIL PTENLPVEFD WRERGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLA SLSEQQLVDC DHECDPEEAG
201: SCDSGCNGGL MNSAFEYTLK TGGLMREEDY PYTGKDGATC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA AYMQTYIGGV SCPYICMRRL
301: NHGVLLVGYG SAGYAPARFK EKPYWIIKNS WGETWGEDGF YKICRGRNVC GVDSLVSTVT ATVSPAAH
101: DLTRSEFKRK HLGVKGGFKL PKDANKAPIL PTENLPVEFD WRERGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLA SLSEQQLVDC DHECDPEEAG
201: SCDSGCNGGL MNSAFEYTLK TGGLMREEDY PYTGKDGATC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA AYMQTYIGGV SCPYICMRRL
301: NHGVLLVGYG SAGYAPARFK EKPYWIIKNS WGETWGEDGF YKICRGRNVC GVDSLVSTVT ATVSPAAH
001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
Arabidopsis Description
RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.