Factsheet for Bra010706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 9
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90310	Canola	vacuole	82.18	100.0
CDY71205	Canola	vacuole	78.17	95.38
Bra011877.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	75.06	91.83
AT4G39090.1	Thale cress	endoplasmic reticulum, golgi, vacuole	73.94	90.22
Bra030299.1-P	Field mustard	endoplasmic reticulum	65.03	80.66
Bra031189.1-P	Field mustard	nucleus	53.45	76.43
KRH29385	Soybean	extracellular	59.91	74.1
KRH24406	Soybean	extracellular	60.13	73.97
PGSC0003DMT400079506	Potato	endoplasmic reticulum, extracellular, vacuole	60.58	73.91
VIT_03s0038g00280.t01	Wine grape	endoplasmic reticulum	61.47	73.21
Solyc01g110110.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	59.91	72.9
Bra033545.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	56.12	68.48
Bra012733.1-P	Field mustard	endoplasmic reticulum	53.23	64.95
Bra007118.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	41.65	51.37
Bra020255.1-P	Field mustard	endoplasmic reticulum, vacuole	30.51	38.16
Bra002485.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	29.62	37.05
Bra036565.1-P	Field mustard	extracellular	16.7	34.09
Bra030498.1-P	Field mustard	vacuole	18.71	23.53
Bra036321.1-P	Field mustard	vacuole	17.59	22.07
Bra006663.1-P	Field mustard	extracellular, plasma membrane, vacuole	16.04	20.93
Bra006666.1-P	Field mustard	vacuole	19.6	19.64
Bra039903.1-P	Field mustard	extracellular, golgi, vacuole	7.35	14.35

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra010706	EnsemblPlants:Bra010706.1	EnsemblPlants:Bra010706.1-P	MEROPS:C01.022
GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	UniProt:M4D2K6	PFAM:PF00112	PFAM:PF08246
PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF519
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C
InterPro:Prot_inhib_I29	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM	UniParc:UPI000254696F
SEG:seg	:	:	:	:	:

Description

AT4G39090 (E=1e-096) RD19, RD19A | RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type endopeptidase/ cysteine-type peptidase

Coordinates

chrA08:+:16064809..16067205

Molecular Weight (calculated)

49498.0 Da

IEP (calculated)

6.076

GRAVY (calculated)

-0.464

Length

449 amino acids

Sequence
(BLAST)

001: MDRLKLSLSL FVLFFLVLSA SSDGNEGGDD LVIKQVVDGG AEPNVLSSED HFSLFKKKFG KVYASSEEHD YRFSVFKTNL RRARRHQKLD PSARHGVTQF
101: SDLTRSEFKK KHLGVRGGFK LPKDANKAPI LPTENLPEEF DWRDRGAVTP VKNQGSCGSC WSFSATGALE GANFLATGKL VSLSEQQLVD CDHESFECDG
201: ELDSNDEQHD GDELTMSKLR WRRADDADDS GTVQWRRAET LGIDDWSIGE GRNNQPWSPI SRCRAASWRR GVVECDPEEA GSCDSGCNGG LMNSAFEYTL
301: KTGGLMREED YPYTGKDGPT CKLDKSKIVA SVSNFSVISI DEEQIAANLV KNGPLAVAIN AAYMQTYIGG VSCPYICMRR LNHGVLLVGY GSAGYAPARF
401: KEKPYWIIKN SWGETWGENG FYKICRGRNV CGVDSLVSTV TAAVSPTAH

Best Arabidopsis Sequence Match ( AT2G21430.1 )
(BLAST)

001: MDYHLRVLFS VSLIFVFVSV SVCGDEDVLI RQVVDETEPK VLSSEDHFTL FKKKFGKVYG SIEEHYYRFS VFKANLLRAM RHQKMDPSAR HGVTQFSDLT
101: RSEFRRKHLG VKGGFKLPKD ANQAPILPTQ NLPEEFDWRD RGAVTPVKNQ GSCGSCWSFS TTGALEGAHF LATGKLVSLS EQQLVDCDHE CDPEEEGSCD
201: SGCNGGLMNS AFEYTLKTGG LMREKDYPYT GTDGGSCKLD RSKIVASVSN FSVVSINEDQ IAANLIKNGP LAVAINAAYM QTYIGGVSCP YICSRRLNHG
301: VLLVGYGSAG FSQARLKEKP YWIIKNSWGE SWGENGFYKI CKGRNICGVD SLVSTVAATT S

Arabidopsis Description

RD19BProbable cysteine protease RD19B [Source:UniProtKB/Swiss-Prot;Acc:P43295]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.