Factsheet for PGSC0003DMT400079506

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 8
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110110.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	96.74	96.48
VIT_03s0038g00280.t01	Wine grape	endoplasmic reticulum	78.53	76.66
KRH29385	Soybean	extracellular	73.37	74.38
CDX99593	Canola	endoplasmic reticulum, golgi	69.02	74.05
CDX90310	Canola	vacuole	73.91	73.71
AT4G39090.1	Thale cress	endoplasmic reticulum, golgi, vacuole	73.64	73.64
Bra011877.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	73.1	73.3
CDY41960	Canola	endoplasmic reticulum, extracellular, vacuole	73.1	73.3
CDY71205	Canola	vacuole	73.1	73.1
KRH24406	Soybean	extracellular	72.28	72.88
AT2G21430.1	Thale cress	endoplasmic reticulum	71.2	72.58
Bra030299.1-P	Field mustard	endoplasmic reticulum	70.65	71.82
CDY15894	Canola	endoplasmic reticulum	70.38	71.55
PGSC0003DMT400009507	Potato	extracellular	68.75	69.7
Bra031189.1-P	Field mustard	nucleus	58.97	69.11
CDY13816	Canola	cytosol	51.9	67.49
Bra010706.1-P	Field mustard	vacuole	73.91	60.58
CDX82031	Canola	nucleus	41.3	57.36
CDY42605	Canola	plastid	30.98	53.77
PGSC0003DMT400079777	Potato	extracellular	53.8	51.3
PGSC0003DMT400048984	Potato	extracellular	38.04	39.33
PGSC0003DMT400071690	Potato	vacuole	36.96	37.88
PGSC0003DMT400026850	Potato	extracellular	18.21	27.13

Protein Annotations

EntrezGene:102585555	MapMan:19.4.1.1	Gene3D:3.90.70.10	MEROPS:C01.022	GO:GO:0003674	GO:GO:0003824
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0016787
GO:GO:0019538	UniProt:M1D1Y4	PFAM:PF00112	PFAM:PF08246	EnsemblPlantsGene:PGSC0003DMG400030957	PGSC:PGSC0003DMG400030957
EnsemblPlants:PGSC0003DMT400079506	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411
PANTHER:PTHR12411:SF519	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A
InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002953B50	RefSeq:XP_006362019.1	SEG:seg	:	:

Description

Cysteine proteinase [Source:PGSC_GENE;Acc:PGSC0003DMG400030957]

Coordinates

chr1:+:86439555..86442130

Molecular Weight (calculated)

40521.8 Da

IEP (calculated)

6.127

GRAVY (calculated)

-0.240

Length

368 amino acids

Sequence
(BLAST)

001: MALRFSLLFL FSILLTTSFL LAVNGEINGG DDDIFIRQVV GDDDHHMLNA DHHFTLFKKR FGKTYASDEE HHYRFSVFKA NLRRAMSHQK LDPSAVHGVT
101: QFSDLTPDEF SQKFLGVNRR LRFPSDANKA PILPTEDLPS DFDWREHGAV TPVKNQGSCG SCWSFSTTGA LEGANFLATG KLVSLSEQQL VDCDHECDPE
201: EKGSCDSGCS GGLMNSAFEY TLKAGGLMRE EDYPYTGTDK ATCKFDNTKV AAKVANFSVV SLDEEQIAAN LVKNGPLAVA INAVFMQTYV GGVSCPYICS
301: KQLDHGVLLV GYGTGFSPIR MKEKPYWIIK NSWGEKWGEN GYYKICRGRN VCGVDSMVST VAAVSTSS

Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)

001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH

Arabidopsis Description

RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.