Factsheet for PGSC0003DMT400079777

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 7
extracellular 6
golgi 4
plasma membrane 4
endoplasmic reticulum 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008260.1.1	Tomato	extracellular	96.37	96.37
Bra007118.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	65.54	69.51
CDY56961	Canola	endoplasmic reticulum	65.54	69.51
CDX73424	Canola	extracellular	65.28	69.23
AT3G54940.2	Thale cress	endoplasmic reticulum, extracellular	65.8	69.21
VIT_13s0019g05120.t01	Wine grape	extracellular, golgi, vacuole	65.54	67.47
KRG91982	Soybean	endoplasmic reticulum, golgi, vacuole	59.59	65.71
KRH34798	Soybean	endoplasmic reticulum, golgi	64.25	65.26
GSMUA_Achr1P00410_001	Banana	endoplasmic reticulum, extracellular, vacuole	57.51	61.5
TraesCS2A01G187400.1	Wheat	extracellular	55.18	58.84
TraesCS2B01G219900.1	Wheat	endoplasmic reticulum, extracellular	55.18	57.57
TraesCS2D01G200500.1	Wheat	extracellular	54.66	57.03
Os07t0480900-01	Rice	endoplasmic reticulum, extracellular	54.92	56.38
EER97214	Sorghum	endoplasmic reticulum, extracellular	54.4	56.3
Zm00001d006364_P001	Maize	extracellular	53.11	55.71
PGSC0003DMT400009507	Potato	extracellular	51.81	55.1
PGSC0003DMT400079506	Potato	endoplasmic reticulum, extracellular, vacuole	51.3	53.8
HORVU2Hr1G036930.1	Barley	endoplasmic reticulum, extracellular, vacuole	54.92	53.27
PGSC0003DMT400048984	Potato	extracellular	33.42	36.24
PGSC0003DMT400071690	Potato	vacuole	32.9	35.38
PGSC0003DMT400026850	Potato	extracellular	17.1	26.72

Protein Annotations

EntrezGene:102604809	MapMan:19.4.1.1	Gene3D:3.90.70.10	MEROPS:C01.A05	GO:GO:0003674	GO:GO:0003824
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538
UniProt:M1D2F1	PFAM:PF00112	PFAM:PF08246	EnsemblPlantsGene:PGSC0003DMG400031066	PGSC:PGSC0003DMG400031066	EnsemblPlants:PGSC0003DMT400079777
PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	PANTHER:PTHR12411	PANTHER:PTHR12411:SF365	InterPro:Papain_like_cys_pep_sf
InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00645
SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000296B1B7	RefSeq:XP_006361690.1
SEG:seg	:	:	:	:	:

Description

Cysteine proteinase [Source:PGSC_GENE;Acc:PGSC0003DMG400031066]

Coordinates

chr11:-:3806472..3809127

Molecular Weight (calculated)

42317.4 Da

IEP (calculated)

7.302

GRAVY (calculated)

-0.309

Length

386 amino acids

Sequence
(BLAST)

001: MAKGGGLTYA LGVTILTCAF SLLPFHHTSV AAAIPEEFKI RQVTDDQNPT TTAHGGSNHH LLGTPAEHRF KSFIQEYNKE YSTREEYIHR LGVFVKNLLK
101: AAEHQALDPT AVHGVTQFSD LTSEEFERMY MGVKGGDRSS LLGEVGSHAP PMEVKDLPKS FDWREKGAVT DVKMQGSCGS CWAFSTTGSI EGANFIATGK
201: LLNLSEQQLV DCDNTCDKKD KKACDSGCRG GLMTNAYKYL IEAGGIEEED SYPYSGKRGE CKFSPDKVAV KVSNFTNIPI DEQQIAAYLV NHGPLAVGLN
301: AVFMQTYIGG VSCPLICGKR WVNHGVLLVG YGSKGFSILR LSNQPYWEIK NSWGKRWGEN GYYKLCRGHG MCGMNTMVSA VMTQTS

Best Arabidopsis Sequence Match ( AT3G54940.2 )
(BLAST)

001: MVAKALAQLI TCIILFCHVV ASVEDLTIRQ VTADNRRIRP NLLGTHTESK FRLFMSDYGK NYSTREEYIH RLGIFAKNVL KAAEHQMMDP SAVHGVTQFS
101: DLTEEEFKRM YTGVADVGGS RGGTVGAEAP MVEVDGLPED FDWREKGGVT EVKNQGACGS CWAFSTTGAA EGAHFVSTGK LLSLSEQQLV DCDQACDPKD
201: KKACDNGCGG GLMTNAYEYL MEAGGLEEER SYPYTGKRGH CKFDPEKVAV RVLNFTTIPL DENQIAANLV RHGPLAVGLN AVFMQTYIGG VSCPLICSKR
301: NVNHGVLLVG YGSKGFSILR LSNKPYWIIK NSWGKKWGEN GYYKLCRGHD ICGINSMVSA VATQVSS

Arabidopsis Description

RD19DProbable cysteine protease RD19D [Source:UniProtKB/Swiss-Prot;Acc:Q8VYS0]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.