Factsheet for AT3G54940.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

extracellular 6
golgi 5
endoplasmic reticulum 6
plasma membrane 4
vacuole 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007118.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	84.47	85.16
CDX73424	Canola	extracellular	83.38	84.07
CDY56961	Canola	endoplasmic reticulum	83.38	84.07
KRG91982	Soybean	endoplasmic reticulum, golgi, vacuole	64.03	67.14
PGSC0003DMT400079777	Potato	extracellular	69.21	65.8
VIT_13s0019g05120.t01	Wine grape	extracellular, golgi, vacuole	66.48	65.07
Solyc11g008260.1.1	Tomato	extracellular	68.39	65.03
KRH34798	Soybean	endoplasmic reticulum, golgi	66.48	64.21
GSMUA_Achr1P00410_001	Banana	endoplasmic reticulum, extracellular, vacuole	60.49	61.5
TraesCS2A01G187400.1	Wheat	extracellular	57.22	58.01
TraesCS2D01G200500.1	Wheat	extracellular	56.95	56.49
TraesCS2B01G219900.1	Wheat	endoplasmic reticulum, extracellular	56.95	56.49
EER97214	Sorghum	endoplasmic reticulum, extracellular	55.86	54.96
Zm00001d006364_P001	Maize	extracellular	55.04	54.89
Os07t0480900-01	Rice	endoplasmic reticulum, extracellular	56.13	54.79
AT2G21430.1	Thale cress	endoplasmic reticulum	52.32	53.19
HORVU2Hr1G036930.1	Barley	endoplasmic reticulum, extracellular, vacuole	56.95	52.51
AT4G39090.1	Thale cress	endoplasmic reticulum, golgi, vacuole	50.95	50.82
AT4G16190.1	Thale cress	endoplasmic reticulum, extracellular	51.23	50.4
AT5G60360.3	Thale cress	endoplasmic reticulum, extracellular, vacuole	35.69	36.29
AT3G45310.1	Thale cress	extracellular, vacuole	33.79	34.64
AT4G01610.1	Thale cress	extracellular, golgi, vacuole	21.8	22.28
AT1G02305.1	Thale cress	extracellular, vacuole	21.53	21.82
AT1G02300.1	Thale cress	extracellular	20.71	20.05

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	EntrezGene:824659	UniProt:A0A178V5N1	ProteinID:AEE79316.1	ArrayExpress:AT3G54940
EnsemblPlantsGene:AT3G54940	RefSeq:AT3G54940	TAIR:AT3G54940	RefSeq:AT3G54940-TAIR-G	EnsemblPlants:AT3G54940.2	TAIR:AT3G54940.2
EMBL:AY070063	Unigene:At.28412	MEROPS:C01.A05	ProteinID:CAB41090.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	RefSeq:NP_567010.5	ProteinID:OAP01510.1	PFAM:PF00112	PFAM:PF08246	PO:PO:0001185
PO:PO:0007616	PO:PO:0009009	PO:PO:0009030	PO:PO:0009031	PRINTS:PR00705	ScanProsite:PS00139
ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF365	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS
InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	UniProt:Q8VYS0
SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM	UniParc:UPI00000AB1C8	:

Description

RD19DProbable cysteine protease RD19D [Source:UniProtKB/Swiss-Prot;Acc:Q8VYS0]

Coordinates

chr3:+:20354351..20356363

Molecular Weight (calculated)

40135.0 Da

IEP (calculated)

7.202

GRAVY (calculated)

-0.198

Length

367 amino acids

Sequence
(BLAST)

001: MVAKALAQLI TCIILFCHVV ASVEDLTIRQ VTADNRRIRP NLLGTHTESK FRLFMSDYGK NYSTREEYIH RLGIFAKNVL KAAEHQMMDP SAVHGVTQFS
101: DLTEEEFKRM YTGVADVGGS RGGTVGAEAP MVEVDGLPED FDWREKGGVT EVKNQGACGS CWAFSTTGAA EGAHFVSTGK LLSLSEQQLV DCDQACDPKD
201: KKACDNGCGG GLMTNAYEYL MEAGGLEEER SYPYTGKRGH CKFDPEKVAV RVLNFTTIPL DENQIAANLV RHGPLAVGLN AVFMQTYIGG VSCPLICSKR
301: NVNHGVLLVG YGSKGFSILR LSNKPYWIIK NSWGKKWGEN GYYKLCRGHD ICGINSMVSA VATQVSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.