CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 1
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85150	Canola	extracellular, golgi, vacuole	95.16	69.21
CDY61859	Canola	extracellular, golgi, vacuole	94.35	64.29
AT1G02305.1	Thale cress	extracellular, vacuole	91.13	62.43
CDY58223	Canola	vacuole	78.63	54.47
CDY07129	Canola	extracellular	77.82	53.91
AT1G02300.1	Thale cress	extracellular	81.05	53.03
TraesCS4A01G252800.1	Wheat	unclear	71.77	51.74
TraesCS4B01G062500.1	Wheat	extracellular	71.37	51.6
TraesCS4A01G252900.1	Wheat	extracellular	72.98	51.57
TraesCS4D01G061400.1	Wheat	extracellular	70.97	51.31
TraesCS4B01G062400.1	Wheat	extracellular	72.58	51.14
HORVU4Hr1G010300.11	Barley	extracellular	72.58	50.85
GSMUA_Achr8P06100_001	Banana	vacuole	72.58	49.05
KXG36303	Sorghum	vacuole	70.16	49.01
GSMUA_Achr3P24740_001	Banana	vacuole	70.56	48.75
TraesCS4A01G252700.1	Wheat	extracellular	67.34	48.41
KRH49642	Soybean	endoplasmic reticulum, extracellular	18.55	47.92
VIT_07s0005g02820.t01	Wine grape	vacuole	74.19	46.94
TraesCS4B01G062600.1	Wheat	vacuole	67.74	46.67
HORVU4Hr1G010360.3	Barley	vacuole	67.34	41.54
CDY64824	Canola	cytosol, mitochondrion, vacuole	27.42	38.86
HORVU4Hr1G010390.14	Barley	vacuole	72.58	34.35
CDY19784	Canola	cytosol, nucleus, plastid	27.42	28.33
Zm00001d022297_P001	Maize	cytosol, extracellular, nucleus	7.66	26.03
CDY13816	Canola	cytosol	23.79	20.85
CDX80173	Canola	endoplasmic reticulum	29.44	20.39
CDY31550	Canola	endoplasmic reticulum, extracellular, vacuole	29.44	20.33
CDY09216	Canola	vacuole	28.63	19.78
CDY09213	Canola	vacuole	28.23	19.5
CDY71205	Canola	vacuole	27.82	18.75
CDX99593	Canola	endoplasmic reticulum, golgi	25.81	18.66
CDX90310	Canola	vacuole	27.42	18.43
CDY41960	Canola	endoplasmic reticulum, extracellular, vacuole	27.02	18.26
CDY15894	Canola	endoplasmic reticulum	26.21	17.96
CDY32227	Canola	endoplasmic reticulum, extracellular, vacuole	26.21	17.66
CDY34441	Canola	endoplasmic reticulum	26.21	17.66
CDX88753	Canola	vacuole	24.6	17.48
CDX82031	Canola	nucleus	18.55	17.36
CDX90537	Canola	endoplasmic reticulum	25.4	17.21
CDX71035	Canola	vacuole	23.79	17.2
CDY56961	Canola	endoplasmic reticulum	25.0	17.03
CDX73424	Canola	extracellular	25.0	17.03
CDY09707	Canola	endoplasmic reticulum, extracellular	25.0	16.94
CDX71045	Canola	endoplasmic reticulum	22.58	15.47
CDY42605	Canola	plastid	12.5	14.62
CDY38163	Canola	golgi, vacuole	8.06	12.5
CDX88755	Canola	extracellular, plasma membrane, vacuole	19.76	11.98
Os05t0310500-02	Rice	extracellular	6.05	7.77
CDY14798	Canola	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.20.5.170	MapMan:19.4.1.1	Gene3D:3.90.70.10	GO:A0A078JE95	UniProt:A0A078JE95	MEROPS:C01.049
EnsemblPlants:CDY64994	ProteinID:CDY64994	ProteinID:CDY64994.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00043988001
PFAM:PF00112	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	PANTHER:PTHR12411	PANTHER:PTHR12411:SF516
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	SMART:SM00645
SUPFAM:SSF54001	UniParc:UPI0004EF0EFD	:	:	:	:

Description

BnaC04g02450DBnaC04g02450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE95]

Coordinates

chrLK034619:+:4324..5756

Molecular Weight (calculated)

27438.1 Da

IEP (calculated)

6.491

GRAVY (calculated)

-0.322

Length

248 amino acids

Sequence
(BLAST)

001: MLSIKFPPSS VIDQGHCGSC WAFGAVESLS DRFCIKYNMN ISLSVNDLLA CCGFLCGQGC NGGYPISAWR YFKHHGVVTE ECDPYFDNTG CSHPGCEPAY
101: PTPKCVRKCV SGNQLWRESK HYGVSAYKVR HDPQDIMAEV YKNGPVEVAF TVYEDFAHYK SGVYKHITGS NIGGHAVKLI GWGTSDDGED YWLLANQWNR
201: SWGDDGYFKI KRGTNECGIE HGVVAGLPSD RNVFNGINTS NDVLVSSF

Best Arabidopsis Sequence Match ( AT1G02305.1 )
(BLAST)

001: MADNCIRLLH SASVFFCLGL LISSFNLLQG IAAENLSKQK LTSWILQNEI VKEVNENPNA GWKASFNDRF ANATVAEFKR LLGVKPTPKT EFLGVPIVSH
101: DISLKLPKEF DARTAWSQCT SIGRILDQGH CGSCWAFGAV ESLSDRFCIK YNMNVSLSVN DLLACCGFLC GQGCNGGYPI AAWRYFKHHG VVTEECDPYF
201: DNTGCSHPGC EPAYPTPKCA RKCVSGNQLW RESKHYGVSA YKVRSHPDDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGTNIGGHA VKLIGWGTSD
301: DGEDYWLLAN QWNRSWGDDG YFKIRRGTNE CGIEHGVVAG LPSDRNVVKG ITTSDDLLVS SF

Arabidopsis Description

CATHB2Cathepsin B-like protease 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VC9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.