Factsheet for TraesCS4A01G252800.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G062500.1	Wheat	extracellular	98.55	98.83
TraesCS4D01G061400.1	Wheat	extracellular	98.26	98.54
TraesCS4A01G252700.1	Wheat	extracellular	87.5	87.25
TraesCS4A01G252900.1	Wheat	extracellular	80.52	78.92
KXG36303	Sorghum	vacuole	80.52	78.03
CDY64994	Canola	cytosol, nucleus, vacuole	51.74	71.77
Zm00001d021615_P002	Maize	extracellular, plasma membrane, vacuole	73.84	69.21
KRG96636	Soybean	nucleus	67.15	64.89
PGSC0003DMT400026850	Potato	extracellular	46.22	64.37
GSMUA_Achr8P06100_001	Banana	vacuole	68.02	63.76
KRH68369	Soybean	nucleus	65.99	63.59
GSMUA_Achr3P24740_001	Banana	vacuole	66.28	63.51
HORVU4Hr1G010390.14	Barley	vacuole	94.77	62.21
Bra030498.1-P	Field mustard	vacuole	63.95	61.62
Solyc02g069090.2.1	Tomato	extracellular	62.5	61.08
Bra036321.1-P	Field mustard	vacuole	63.08	60.61
CDY58223	Canola	vacuole	62.5	60.06
AT1G02305.1	Thale cress	extracellular, vacuole	63.08	59.94
CDY61859	Canola	extracellular, golgi, vacuole	63.37	59.89
AT4G01610.1	Thale cress	extracellular, golgi, vacuole	62.5	59.89
CDX85150	Canola	extracellular, golgi, vacuole	59.3	59.82
CDY07129	Canola	extracellular	61.92	59.5
Solyc02g069110.2.1	Tomato	extracellular, golgi, vacuole	58.43	56.78
AT1G02300.1	Thale cress	extracellular	60.47	54.88
VIT_07s0005g02820.t01	Wine grape	vacuole	61.63	54.08
Solyc02g069100.2.1	Tomato	plastid	55.23	53.67
KRH49642	Soybean	endoplasmic reticulum, extracellular	14.53	52.08
CDY64824	Canola	cytosol, mitochondrion, vacuole	26.45	52.0
Os05t0310500-02	Rice	extracellular	22.67	40.41
CDY38163	Canola	golgi, vacuole	17.73	38.12
Bra039903.1-P	Field mustard	extracellular, golgi, vacuole	21.8	32.61
TraesCS5A01G210100.1	Wheat	unclear	25.58	24.11
TraesCS5A01G326100.1	Wheat	golgi	23.26	21.22
TraesCS2A01G187400.1	Wheat	extracellular	21.8	20.72
TraesCS2A01G273100.1	Wheat	golgi	22.09	20.05
CDY14798	Canola	extracellular	2.03	5.74

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004197	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	GO:GO:0050790
PFAM:PF00112	PFAM:PF08127	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	PANTHER:PTHR12411
PANTHER:PTHR12411:SF516	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C
InterPro:Propeptide_C1A	SMART:SM00645	SUPFAM:SSF54001	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4A01G252800	EnsemblPlants:TraesCS4A01G252800.1
TIGR:cd02620	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:565040539..565043592

Molecular Weight (calculated)

37646.7 Da

IEP (calculated)

6.810

GRAVY (calculated)

-0.242

Length

344 amino acids

Sequence
(BLAST)

001: MGRSLLPLAL LVVLSAAAAA PQLVGAAGRD HSLGIIQKDI IQTVNNHPNA GWTAGYNPYL ANYTIEQFKH MLGVKPTPPG LRARVRTKTH SRSEQLPKVF
101: DARSKWSGCS TIGKILDQGH CGSCWAFGAV ECLQDRFCIH HNMNITLSAN DLVACCGFMC GDGCDGGYPI SAWQYFVQNG VVTDECDPYF DQVGCKHPGC
201: EPAYPTPVCE KKCKVQNQVW EEKKHFSINA YQVNSDPHDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGGVMGGHA VKLIGWGTSD AGEDYWLLAN
301: QWNRGWGDDG YFKIIRGKNE CGIEEDVTAG MPSTKNIAGS AFAI

Best Arabidopsis Sequence Match ( AT1G02305.1 )
(BLAST)

001: MADNCIRLLH SASVFFCLGL LISSFNLLQG IAAENLSKQK LTSWILQNEI VKEVNENPNA GWKASFNDRF ANATVAEFKR LLGVKPTPKT EFLGVPIVSH
101: DISLKLPKEF DARTAWSQCT SIGRILDQGH CGSCWAFGAV ESLSDRFCIK YNMNVSLSVN DLLACCGFLC GQGCNGGYPI AAWRYFKHHG VVTEECDPYF
201: DNTGCSHPGC EPAYPTPKCA RKCVSGNQLW RESKHYGVSA YKVRSHPDDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGTNIGGHA VKLIGWGTSD
301: DGEDYWLLAN QWNRSWGDDG YFKIRRGTNE CGIEHGVVAG LPSDRNVVKG ITTSDDLLVS SF

Arabidopsis Description

CATHB2Cathepsin B-like protease 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VC9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.