CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 8
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96636	Soybean	nucleus	96.08	96.35
KRH49642	Soybean	endoplasmic reticulum, extracellular	20.17	75.0
PGSC0003DMT400026850	Potato	extracellular	48.18	69.64
Solyc02g069090.2.1	Tomato	extracellular	67.23	68.18
KXG36303	Sorghum	vacuole	66.11	66.48
GSMUA_Achr3P24740_001	Banana	vacuole	66.39	66.02
TraesCS4A01G252800.1	Wheat	unclear	63.59	65.99
TraesCS4B01G062400.1	Wheat	extracellular	64.99	65.91
TraesCS4B01G062500.1	Wheat	extracellular	63.31	65.89
HORVU4Hr1G010300.11	Barley	extracellular	65.27	65.82
TraesCS4A01G252900.1	Wheat	extracellular	64.71	65.81
TraesCS4D01G061400.1	Wheat	extracellular	63.03	65.6
VIT_07s0005g02820.t01	Wine grape	vacuole	71.99	65.56
Solyc02g069110.2.1	Tomato	extracellular, golgi, vacuole	64.71	65.25
GSMUA_Achr8P06100_001	Banana	vacuole	66.67	64.85
Solyc02g069100.2.1	Tomato	plastid	63.87	64.41
TraesCS4A01G252700.1	Wheat	extracellular	61.9	64.06
TraesCS4B01G062600.1	Wheat	vacuole	62.18	61.67
HORVU4Hr1G010360.3	Barley	vacuole	62.47	55.47
HORVU4Hr1G010390.14	Barley	vacuole	64.43	43.89
Os05t0310500-02	Rice	extracellular	19.05	35.23
Zm00001d022297_P001	Maize	cytosol, extracellular, nucleus	6.16	30.14
KRH13188	Soybean	peroxisome	6.16	24.72
KRH02604	Soybean	vacuole	23.25	23.51
KRH12540	Soybean	extracellular	23.25	23.45
KRH05898	Soybean	endoplasmic reticulum, vacuole	24.09	23.24
KRH17382	Soybean	endoplasmic reticulum	23.81	23.16
KRH61087	Soybean	endoplasmic reticulum	23.25	22.68
KRH51767	Soybean	endoplasmic reticulum	23.25	22.68
KRG98609	Soybean	mitochondrion	18.49	22.15
KRG91982	Soybean	endoplasmic reticulum, golgi, vacuole	21.57	22.0
KRH34798	Soybean	endoplasmic reticulum, golgi	22.97	21.58
KRH29385	Soybean	extracellular	21.85	21.49
KRH24406	Soybean	extracellular	21.85	21.37
KRH37496	Soybean	vacuole	23.53	20.69
KRG99207	Soybean	cytosol, nucleus, plastid	15.13	20.22
KRH49717	Soybean	endoplasmic reticulum	8.68	17.61

Protein Annotations

EntrezGene:100778103	MapMan:19.4.1.1	Gene3D:3.90.70.10	EMBL:ACUP02002108	MEROPS:C01.049	EnsemblPlantsGene:GLYMA_03G226300
GO:GO:0003674	GO:GO:0003824	GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0050790	GO:GO:0051603	UniProt:I1JQZ6	EnsemblPlants:KRH68369	ProteinID:KRH68369
ProteinID:KRH68369.1	PFAM:PF00112	PFAM:PF08127	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639
PANTHER:PTHR12411	PANTHER:PTHR12411:SF516	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A
InterPro:Peptidase_C1A_C	InterPro:Propeptide_C1A	SMART:SM00645	SUPFAM:SSF54001	SignalP:SignalP-noTM	UniParc:UPI0002339EC7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:42850120..42856567

Molecular Weight (calculated)

39698.8 Da

IEP (calculated)

6.228

GRAVY (calculated)

-0.294

Length

357 amino acids

Sequence
(BLAST)

001: MASTHLLPLA TFFLLLSASY LQIAGAEAQP LTSLKLNSHI LQESTAKEIN ENPEAGWEAA INPRFSNYTV EQFKRLLGVK PMPKKELRST PAISHPKTLK
101: LPKNFDARTA WSQCSTIGRI LDQGHCGSCW AFGAVESLSD RFCIHFDVNI SLSVNDLLAC CGFLCGSGCD GGYPLYAWRY LAHHGVVTEE CDPYFDQIGC
201: SHPGCEPAYR TPKCVKKCVS GNQVWKKSKH YSVSAYRVNS DPHDIMAEVY KNGPVEVAFT VYEDFAYYKS GVYKHITGYE LGGHAVKLIG WGTTDDGEDY
301: WLLANQWNRE WGDDGYFKIR RGTNECGIEE DVTAGLPSTK NLVREVTDMD ADAAVSF

Best Arabidopsis Sequence Match ( AT1G02305.1 )
(BLAST)

001: MADNCIRLLH SASVFFCLGL LISSFNLLQG IAAENLSKQK LTSWILQNEI VKEVNENPNA GWKASFNDRF ANATVAEFKR LLGVKPTPKT EFLGVPIVSH
101: DISLKLPKEF DARTAWSQCT SIGRILDQGH CGSCWAFGAV ESLSDRFCIK YNMNVSLSVN DLLACCGFLC GQGCNGGYPI AAWRYFKHHG VVTEECDPYF
201: DNTGCSHPGC EPAYPTPKCA RKCVSGNQLW RESKHYGVSA YKVRSHPDDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGTNIGGHA VKLIGWGTSD
301: DGEDYWLLAN QWNRSWGDDG YFKIRRGTNE CGIEHGVVAG LPSDRNVVKG ITTSDDLLVS SF

Arabidopsis Description

CATHB2Cathepsin B-like protease 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VC9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.