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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH51767 Soybean endoplasmic reticulum 94.81 94.81
KRH05898 Soybean endoplasmic reticulum, vacuole 78.96 78.11
KRH17382 Soybean endoplasmic reticulum 78.14 77.93
VIT_04s0023g02450.t01 Wine grape vacuole 75.96 75.75
VIT_18s0001g13400.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 76.23 75.2
VIT_18s0001g13380.t01 Wine grape extracellular 74.04 74.25
CDY34441 Canola endoplasmic reticulum 74.59 74.18
CDY32227 Canola endoplasmic reticulum, extracellular, vacuole 74.32 73.91
Bra033545.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 74.32 73.91
GSMUA_Achr3P17220_001 Banana nucleus 59.84 73.74
KRH29385 Soybean extracellular 72.95 73.55
KRH24406 Soybean extracellular 71.86 72.05
Solyc04g080960.2.1 Tomato extracellular 69.95 70.52
GSMUA_Achr6P21090_001 Banana endoplasmic reticulum 70.22 70.22
VIT_18s0001g13390.t01 Wine grape endoplasmic reticulum 70.49 70.11
HORVU7Hr1G069280.1 Barley nucleus 47.27 69.76
PGSC0003DMT400009507 Potato extracellular 69.13 69.7
AT4G16190.1 Thale cress endoplasmic reticulum, extracellular 70.77 69.44
GSMUA_Achr6P27980_001 Banana vacuole 69.4 68.28
HORVU7Hr1G074340.1 Barley plastid 44.81 67.77
CDX90537 Canola endoplasmic reticulum 66.39 66.39
Zm00001d016446_P001 Maize extracellular 67.21 66.31
Bra012733.1-P Field mustard endoplasmic reticulum 66.67 66.3
CDY09707 Canola endoplasmic reticulum, extracellular 66.12 66.12
EES05034 Sorghum endoplasmic reticulum 66.67 65.77
KXG26035 Sorghum endoplasmic reticulum, golgi, vacuole 60.66 65.68
Os02t0469600-01 Rice extracellular 66.67 65.42
TraesCS5D01G332200.1 Wheat extracellular 66.67 64.72
TraesCS5B01G326500.1 Wheat extracellular 66.67 64.72
TraesCS5A01G326100.1 Wheat golgi 66.67 64.72
TraesCS2A01G273100.1 Wheat golgi 66.94 64.64
HORVU4Hr1G082210.1 Barley cytosol, mitochondrion, nucleus, plastid 46.17 64.5
HORVU5Hr1G082810.1 Barley vacuole 66.39 64.46
TraesCS2D01G272400.1 Wheat endoplasmic reticulum, golgi 63.66 63.49
KRH49717 Soybean endoplasmic reticulum 27.32 56.82
HORVU2Hr1G066680.1 Barley endoplasmic reticulum 56.01 54.23
KRG91982 Soybean endoplasmic reticulum, golgi, vacuole 49.45 51.71
Os04t0311400-01 Rice nucleus 53.28 50.78
KRH34798 Soybean endoplasmic reticulum, golgi 51.09 49.21
KRH13188 Soybean peroxisome 9.56 39.33
KRH12540 Soybean extracellular 37.98 39.27
KRH02604 Soybean vacuole 36.89 38.24
KRG98609 Soybean mitochondrion 29.23 35.91
KRH37496 Soybean vacuole 36.89 33.25
KRG99207 Soybean cytosol, nucleus, plastid 23.5 32.21
KRH68369 Soybean nucleus 22.68 23.25
KRG96636 Soybean nucleus 22.4 23.03
KRH49642 Soybean endoplasmic reticulum, extracellular 6.01 22.92
Protein Annotations
EntrezGene:100779565MapMan:19.4.1.1Gene3D:3.90.70.10EMBL:ACUP02002155MEROPS:C01.022EnsemblPlantsGene:GLYMA_04G027600
GO:GO:0003674GO:GO:0003824GO:GO:0004197GO:GO:0005575GO:GO:0005576GO:GO:0005615
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005764GO:GO:0005773GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234GO:GO:0009056GO:GO:0009987
GO:GO:0016787GO:GO:0019538GO:GO:0051603UniProt:I1JT65EnsemblPlants:KRH61087ProteinID:KRH61087
ProteinID:KRH61087.1PFAM:PF00112PFAM:PF08246PRINTS:PR00705ScanProsite:PS00139ScanProsite:PS00639
ScanProsite:PS00640PANTHER:PTHR12411PANTHER:PTHR12411:SF365InterPro:Papain_like_cys_pep_sfInterPro:Pept_asp_ASInterPro:Pept_cys_AS
InterPro:Pept_his_ASInterPro:Peptidase_C1AInterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29SMART:SM00645SMART:SM00848
SUPFAM:SSF54001SignalP:SignalP-noTMUniParc:UPI0002339992SEG:seg::
Description
hypothetical protein
Coordinates
chr4:-:2252816..2254585
Molecular Weight (calculated)
40127.4 Da
IEP (calculated)
6.339
GRAVY (calculated)
-0.214
Length
366 amino acids
Sequence
(BLAST)
001: MANLSILFFG LLLFSAAVAT VERIDDEDNL LIRQVVPDAE DHHLLNAEHH FSAFKTKFAK TYATQEEHDH RFRIFKNNLL RAKSHQKLDP SAVHGVTRFS
101: DLTPSEFRGQ FLGLKPLRLP SDAQKAPILP TSDLPTDFDW RDHGAVTGVK NQGSCGSCWS FSAVGALEGA HFLSTGGLVS LSEQQLVDCD HECDPEERGA
201: CDSGCNGGLM TTAFEYTLKA GGLMREEDYP YTGRDRGPCK FDKSKIAASV ANFSVVSLDE EQIAANLVKN GPLAVGINAV FMQTYIGGVS CPYICGKHLD
301: HGVLLVGYGS GAYAPIRFKE KPYWIIKNSW GESWGEEGYY KICRGRNVCG VDSMVSTVAA IHVSNH
Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)
001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
Arabidopsis Description
RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.