Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G326500.1 | Wheat | extracellular | 98.67 | 98.67 |
| TraesCS5A01G326100.1 | Wheat | golgi | 98.67 | 98.67 |
| HORVU5Hr1G082810.1 | Barley | vacuole | 96.29 | 96.29 |
| HORVU7Hr1G069280.1 | Barley | nucleus | 59.95 | 91.13 |
| Os02t0469600-01 | Rice | extracellular | 84.88 | 85.79 |
| HORVU7Hr1G074340.1 | Barley | plastid | 54.91 | 85.54 |
| HORVU4Hr1G082210.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 58.09 | 83.59 |
| Zm00001d016446_P001 | Maize | extracellular | 82.23 | 83.56 |
| EES05034 | Sorghum | endoplasmic reticulum | 79.84 | 81.13 |
| TraesCS2D01G272400.1 | Wheat | endoplasmic reticulum, golgi | 73.21 | 75.2 |
| GSMUA_Achr3P17220_001 | Banana | nucleus | 58.62 | 74.41 |
| GSMUA_Achr6P21090_001 | Banana | endoplasmic reticulum | 68.97 | 71.04 |
| GSMUA_Achr6P27980_001 | Banana | vacuole | 69.23 | 70.16 |
| PGSC0003DMT400009507 | Potato | extracellular | 64.46 | 66.94 |
| KRH61087 | Soybean | endoplasmic reticulum | 64.72 | 66.67 |
| KRH51767 | Soybean | endoplasmic reticulum | 64.46 | 66.39 |
| VIT_04s0023g02450.t01 | Wine grape | vacuole | 63.66 | 65.4 |
| KRH05898 | Soybean | endoplasmic reticulum, vacuole | 63.93 | 65.14 |
| KRH17382 | Soybean | endoplasmic reticulum | 63.4 | 65.12 |
| Solyc04g080960.2.1 | Tomato | extracellular | 62.6 | 65.01 |
| VIT_18s0001g13400.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 63.13 | 64.15 |
| CDY32227 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.54 | 63.04 |
| VIT_18s0001g13390.t01 | Wine grape | endoplasmic reticulum | 61.54 | 63.04 |
| Bra033545.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 61.54 | 63.04 |
| VIT_18s0001g13380.t01 | Wine grape | extracellular | 61.01 | 63.01 |
| CDY34441 | Canola | endoplasmic reticulum | 61.27 | 62.77 |
| AT4G16190.1 | Thale cress | endoplasmic reticulum, extracellular | 60.74 | 61.39 |
| CDX90537 | Canola | endoplasmic reticulum | 58.89 | 60.66 |
| CDY09707 | Canola | endoplasmic reticulum, extracellular | 58.36 | 60.11 |
| Bra012733.1-P | Field mustard | endoplasmic reticulum | 58.62 | 60.05 |
| TraesCS2D01G200500.1 | Wheat | extracellular | 52.25 | 53.24 |
| KRH49717 | Soybean | endoplasmic reticulum | 22.81 | 48.86 |
| TraesCS5D01G216300.1 | Wheat | unclear | 32.1 | 33.52 |
| TraesCS4D01G061400.1 | Wheat | extracellular | 21.22 | 23.32 |
Protein Annotations
| MapMan:19.4.1.1 | Gene3D:3.90.70.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | PFAM:PF00112 | PFAM:PF08246 |
| PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF380 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C |
| InterPro:Prot_inhib_I29 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS5D01G332200 |
| EnsemblPlants:TraesCS5D01G332200.1 | TIGR:cd02248 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:-:423232786..423235157
Molecular Weight (calculated)
41070.5 Da
IEP (calculated)
6.133
GRAVY (calculated)
-0.335
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHRLVAPFL VLLGLLLSPP PAAAAAGDEE PLIRQVVGGP DPLDNDLELD SQFLGFVQRF GKTYRDAEEH AHRLSVFKAN LRRARRHQML DPSAEHGVTK
101: FSDLTPAEFR RTFLGLKTTR RSFLREMAGS AHDAPVLPTD GLPEDFDWRD HGAVGPVKNQ GSCGSCWSFS ASGALEGANY LATGKMEVLS EQQLVDCDHE
201: CDPAEPDSCD AGCNGGLMTS AFSYLLKSGG LEREKDYPYT GKDGTCKFEK SKIAASVQNF SVVAVDEEQI AANLVKYGPL AIGINAAYMQ TYIGGVSCPY
301: ICGRHLDHGV LLVGYGASGF APSRFKEKPY WIIKNSWGEN WGDKGYYKIC RGSNVRNKCG VDSMVSTVSA THASKEE
101: FSDLTPAEFR RTFLGLKTTR RSFLREMAGS AHDAPVLPTD GLPEDFDWRD HGAVGPVKNQ GSCGSCWSFS ASGALEGANY LATGKMEVLS EQQLVDCDHE
201: CDPAEPDSCD AGCNGGLMTS AFSYLLKSGG LEREKDYPYT GKDGTCKFEK SKIAASVQNF SVVAVDEEQI AANLVKYGPL AIGINAAYMQ TYIGGVSCPY
301: ICGRHLDHGV LLVGYGASGF APSRFKEKPY WIIKNSWGEN WGDKGYYKIC RGSNVRNKCG VDSMVSTVSA THASKEE
001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
Arabidopsis Description
RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.