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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 8
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH05898 Soybean endoplasmic reticulum, vacuole 94.28 93.51
KRH51767 Soybean endoplasmic reticulum 79.29 79.51
KRH49717 Soybean endoplasmic reticulum 37.6 78.41
KRH61087 Soybean endoplasmic reticulum 77.93 78.14
VIT_18s0001g13400.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 73.84 73.05
VIT_04s0023g02450.t01 Wine grape vacuole 72.75 72.75
VIT_18s0001g13380.t01 Wine grape extracellular 71.39 71.78
KRH29385 Soybean extracellular 69.75 70.52
KRH24406 Soybean extracellular 69.75 70.14
PGSC0003DMT400009507 Potato extracellular 68.66 69.42
CDY32227 Canola endoplasmic reticulum, extracellular, vacuole 69.48 69.29
Bra033545.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 69.48 69.29
CDY34441 Canola endoplasmic reticulum 69.21 69.02
VIT_18s0001g13390.t01 Wine grape endoplasmic reticulum 68.94 68.75
GSMUA_Achr3P17220_001 Banana nucleus 55.59 68.69
Solyc04g080960.2.1 Tomato extracellular 67.85 68.59
GSMUA_Achr6P21090_001 Banana endoplasmic reticulum 66.76 66.94
HORVU7Hr1G069280.1 Barley nucleus 44.96 66.53
AT4G16190.1 Thale cress endoplasmic reticulum, extracellular 67.3 66.22
EES05034 Sorghum endoplasmic reticulum 66.76 66.04
Os02t0469600-01 Rice extracellular 67.03 65.95
GSMUA_Achr6P27980_001 Banana vacuole 66.76 65.86
Zm00001d016446_P001 Maize extracellular 66.21 65.5
HORVU7Hr1G074340.1 Barley plastid 43.05 65.29
KXG26035 Sorghum endoplasmic reticulum, golgi, vacuole 59.67 64.79
TraesCS2A01G273100.1 Wheat golgi 66.48 64.38
CDX90537 Canola endoplasmic reticulum 64.03 64.21
CDY09707 Canola endoplasmic reticulum, extracellular 64.03 64.21
Bra012733.1-P Field mustard endoplasmic reticulum 63.76 63.59
TraesCS5D01G332200.1 Wheat extracellular 65.12 63.4
TraesCS5A01G326100.1 Wheat golgi 65.12 63.4
HORVU5Hr1G082810.1 Barley vacuole 65.12 63.4
TraesCS5B01G326500.1 Wheat extracellular 64.85 63.13
TraesCS2D01G272400.1 Wheat endoplasmic reticulum, golgi 62.67 62.67
HORVU4Hr1G082210.1 Barley cytosol, mitochondrion, nucleus, plastid 44.69 62.6
HORVU2Hr1G066680.1 Barley endoplasmic reticulum 55.86 54.23
KRG91982 Soybean endoplasmic reticulum, golgi, vacuole 50.14 52.57
KRH34798 Soybean endoplasmic reticulum, golgi 52.32 50.53
Os04t0311400-01 Rice nucleus 52.59 50.26
KRH12540 Soybean extracellular 38.96 40.4
KRH02604 Soybean vacuole 37.87 39.38
KRH13188 Soybean peroxisome 9.54 39.33
KRG98609 Soybean mitochondrion 29.97 36.91
KRH37496 Soybean vacuole 38.15 34.48
KRG99207 Soybean cytosol, nucleus, plastid 24.25 33.33
KRH68369 Soybean nucleus 23.16 23.81
KRG96636 Soybean nucleus 22.62 23.31
KRH49642 Soybean endoplasmic reticulum, extracellular 5.99 22.92
Protein Annotations
EntrezGene:100791503MapMan:19.4.1.1Gene3D:3.90.70.10EMBL:ACUP02009085MEROPS:C01.022EnsemblPlantsGene:GLYMA_14G216300
GO:GO:0003674GO:GO:0003824GO:GO:0004197GO:GO:0005575GO:GO:0005576GO:GO:0005615
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005764GO:GO:0005773GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234GO:GO:0009056GO:GO:0009987
GO:GO:0016787GO:GO:0019538GO:GO:0051603UniProt:I1MC68EnsemblPlants:KRH17382ProteinID:KRH17382
ProteinID:KRH17382.1PFAM:PF00112PFAM:PF08246PRINTS:PR00705ScanProsite:PS00139ScanProsite:PS00639
ScanProsite:PS00640PANTHER:PTHR12411PANTHER:PTHR12411:SF365InterPro:Papain_like_cys_pep_sfInterPro:Pept_asp_ASInterPro:Pept_cys_AS
InterPro:Pept_his_ASInterPro:Peptidase_C1AInterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29SMART:SM00645SMART:SM00848
SUPFAM:SSF54001SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000233BB34SEG:seg:
Description
hypothetical protein
Coordinates
chr14:+:48088714..48091531
Molecular Weight (calculated)
40243.7 Da
IEP (calculated)
7.256
GRAVY (calculated)
-0.236
Length
367 amino acids
Sequence
(BLAST)
001: MARYSFLLAL LLLLFAAVSS AADDILIRQV VPDAVGEAAE KEEDHLLNAE HHFASFKAKF GKKYATKEEH DRRFGVFKSN LRRARLHAKL DPSAVHGVTK
101: FSDLTPAEFR RQFLGFKPLR LPANAQKAPI LPTKDLPKDF DWRDKGAVTN VKDQGACGSC WSFSTTGALE GAHYLATGEL VSLSEQQLVD CDHVCDPEEY
201: GACDSGCNGG LMNNAFEYIL QSGGVQKEKD YPYTGRDGTC KFDKTKVAAT VSNYSVVSLD EDQIAANLVK NGPLAVGINA VFMQTYIGGV SCPYICGKHL
301: DHGVLIVGYG EGAYAPIRFK NKPYWIIKNS WGESWGENGY YKICRGRNVC GVDSMVSTVA AIYPSSH
Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)
001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
Arabidopsis Description
RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.