Factsheet for Solyc02g069090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 8
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

extracellular: 22364583
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02305.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT1G02305.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069110.2.1	Tomato	extracellular, golgi, vacuole	78.12	77.68
Solyc02g069100.2.1	Tomato	plastid	72.73	72.32
KRG96636	Soybean	nucleus	69.89	69.1
KRH68369	Soybean	nucleus	68.18	67.23
Bra030498.1-P	Field mustard	vacuole	67.61	66.67
AT4G01610.1	Thale cress	extracellular, golgi, vacuole	67.9	66.57
Bra036321.1-P	Field mustard	vacuole	67.61	66.48
AT1G02305.1	Thale cress	extracellular, vacuole	67.61	65.75
GSMUA_Achr3P24740_001	Banana	vacuole	66.19	64.9
GSMUA_Achr8P06100_001	Banana	vacuole	67.61	64.85
TraesCS4D01G061400.1	Wheat	extracellular	61.08	62.68
AT1G02300.1	Thale cress	extracellular	67.33	62.53
TraesCS4A01G252800.1	Wheat	unclear	61.08	62.5
TraesCS4B01G062500.1	Wheat	extracellular	60.8	62.39
HORVU4Hr1G010300.11	Barley	extracellular	62.22	61.86
VIT_07s0005g02820.t01	Wine grape	vacuole	68.47	61.48
KXG36303	Sorghum	vacuole	61.93	61.41
TraesCS4A01G252900.1	Wheat	extracellular	61.08	61.25
TraesCS4B01G062400.1	Wheat	extracellular	61.08	61.08
TraesCS4A01G252700.1	Wheat	extracellular	59.38	60.58
TraesCS4B01G062600.1	Wheat	vacuole	59.94	58.61
KRH49642	Soybean	endoplasmic reticulum, extracellular	15.91	58.33
HORVU4Hr1G010360.3	Barley	vacuole	59.66	52.24
HORVU4Hr1G010390.14	Barley	vacuole	62.22	41.79
Bra039903.1-P	Field mustard	extracellular, golgi, vacuole	24.15	36.96
Os05t0310500-02	Rice	extracellular	17.9	32.64
Zm00001d022297_P001	Maize	cytosol, extracellular, nucleus	5.97	28.77
Solyc07g041900.2.1	Tomato	extracellular	24.15	23.88
Solyc01g110110.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	21.88	20.87
Solyc04g080960.2.1	Tomato	extracellular	21.02	20.39
Solyc11g008260.1.1	Tomato	extracellular	21.02	19.17
Solyc07g041920.2.1	Tomato	extracellular, golgi, vacuole	12.78	17.31
CDY14798	Canola	extracellular	0.85	2.46

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	MEROPS:C01.049	GO:GO:0003674	GO:GO:0003824	GO:GO:0004197
GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008234
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0050790	GO:GO:0051603
UniProt:K4B7P1	PFAM:PF00112	PFAM:PF08127	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639
PANTHER:PTHR12411	PANTHER:PTHR12411:SF516	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A
InterPro:Peptidase_C1A_C	InterPro:Propeptide_C1A	SMART:SM00645	SUPFAM:SSF54001	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc02g069090.2
EnsemblPlants:Solyc02g069090.2.1	UniParc:UPI0002767EDA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:39054022..39060835

Molecular Weight (calculated)

39011.4 Da

IEP (calculated)

6.046

GRAVY (calculated)

-0.252

Length

352 amino acids

Sequence
(BLAST)

001: MKHIATFLLL VSVSTLVLQV VAENPISQAK AESAILQDSI VKQVNENEKA GWRAALNPQF SNFTVSQFKR LLGVKPTRKG DLKGIPILTH PKLLKLPQEF
101: DARVAWPQCS TIGRILDQGH CGSCWAFGAA ESLSDRFCIH YGLNISLSAN DIIACCGYLC GDGCDGGYPL EAWKYFVRKG VVTEECDPYF DNKGCSHPGC
201: EPGYPTPQCK RKCVKENLLW SKSKHFGINA YLINSDPYSI MTEVYKNGPV EVSFTVYEDF AHYKSGVYKH INGEEMGGHA VKLIGWGTSE DGEDYWLLAN
301: QWNRGWGDDG YFKIRRGTNE CGIEEEVVAG MPSAKNLNVE LDVSDALLDA SM

Best Arabidopsis Sequence Match ( AT4G01610.1 )
(BLAST)

001: MAVYNTKLCL ASVFLLLGLL LAFDLKGIEA ESLTKQKLDS KILQDEIVKK VNENPNAGWK AAINDRFSNA TVAEFKRLLG VKPTPKKHFL GVPIVSHDPS
101: LKLPKAFDAR TAWPQCTSIG NILDQGHCGS CWAFGAVESL SDRFCIQFGM NISLSVNDLL ACCGFRCGDG CDGGYPIAAW QYFSYSGVVT EECDPYFDNT
201: GCSHPGCEPA YPTPKCSRKC VSDNKLWSES KHYSVSTYTV KSNPQDIMAE VYKNGPVEVS FTVYEDFAHY KSGVYKHITG SNIGGHAVKL IGWGTSSEGE
301: DYWLMANQWN RGWGDDGYFM IRRGTNECGI EDEPVAGLPS SKNVFRVDTG SNDLPVASV

Arabidopsis Description

CATHB3Cathepsin B-like protease 3 [Source:UniProtKB/Swiss-Prot;Acc:Q94K85]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.