Factsheet for Solyc02g069100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02305.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT1G02305.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069090.2.1	Tomato	extracellular	72.32	72.73
Solyc02g069110.2.1	Tomato	extracellular, golgi, vacuole	72.6	72.6
Bra030498.1-P	Field mustard	vacuole	65.54	64.99
KRG96636	Soybean	nucleus	65.25	64.89
KRH68369	Soybean	nucleus	64.41	63.87
AT1G02305.1	Thale cress	extracellular, vacuole	64.97	63.54
AT4G01610.1	Thale cress	extracellular, golgi, vacuole	62.99	62.12
Bra036321.1-P	Field mustard	vacuole	62.43	61.73
GSMUA_Achr3P24740_001	Banana	vacuole	60.45	59.61
GSMUA_Achr8P06100_001	Banana	vacuole	60.17	58.04
HORVU4Hr1G010300.11	Barley	extracellular	57.91	57.91
TraesCS4A01G252900.1	Wheat	extracellular	57.06	57.55
TraesCS4B01G062400.1	Wheat	extracellular	57.06	57.39
AT1G02300.1	Thale cress	extracellular	60.45	56.46
VIT_07s0005g02820.t01	Wine grape	vacuole	62.43	56.38
KXG36303	Sorghum	vacuole	56.21	56.06
TraesCS4D01G061400.1	Wheat	extracellular	53.67	55.39
TraesCS4A01G252800.1	Wheat	unclear	53.67	55.23
TraesCS4B01G062500.1	Wheat	extracellular	53.39	55.1
TraesCS4A01G252700.1	Wheat	extracellular	52.82	54.2
TraesCS4B01G062600.1	Wheat	vacuole	52.54	51.67
KRH49642	Soybean	endoplasmic reticulum, extracellular	13.56	50.0
HORVU4Hr1G010360.3	Barley	vacuole	52.82	46.52
HORVU4Hr1G010390.14	Barley	vacuole	54.8	37.02
Os05t0310500-02	Rice	extracellular	18.36	33.68
Bra039903.1-P	Field mustard	extracellular, golgi, vacuole	21.47	33.04
Solyc07g041900.2.1	Tomato	extracellular	23.16	23.03
Solyc04g080960.2.1	Tomato	extracellular	21.47	20.94
Solyc01g110110.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	21.75	20.87
Solyc11g008260.1.1	Tomato	extracellular	20.06	18.39
Zm00001d022297_P001	Maize	cytosol, extracellular, nucleus	3.39	16.44
Solyc07g041920.2.1	Tomato	extracellular, golgi, vacuole	11.86	16.15
CDY14798	Canola	extracellular	1.41	4.1

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	MEROPS:C01.049	GO:GO:0003674	GO:GO:0003824	GO:GO:0004197
GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008234
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0050790	GO:GO:0051603
UniProt:K4B7P2	PFAM:PF00112	PFAM:PF08127	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411
PANTHER:PTHR12411:SF516	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C
InterPro:Propeptide_C1A	SMART:SM00645	SUPFAM:SSF54001	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc02g069100.2	EnsemblPlants:Solyc02g069100.2.1
TMHMM:TMhelix	UniParc:UPI0002767EDB	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:39063878..39067764

Molecular Weight (calculated)

38914.0 Da

IEP (calculated)

7.810

GRAVY (calculated)

-0.022

Length

354 amino acids

Sequence
(BLAST)

001: MALTLKSLIT PLLFGAFFIL ILQQVAAEKP ITEAKLESAI LQDSIVKQVN ENAEAGWKAA FNPQLSNFTV SQFKRLLGVK PAREGDLEGI PVLTHPKLKE
101: LPKEFDARKA WPQCSTIGRI LGQDIAVLVG LLVLLSRCLI VSVSIIICIS LSVNDLLACC GFLCGSGCDG GYPIAAWRYF KRRGVVTEEC DPYFDTTGCS
201: HPGCEPLYPT PKCHRKCVKG NVLWRKSKHY GVNAYRVSHD PQSIMAEVYK NGPVEVSFTV YEDFAHYKSG VYKHVTGGNM GGHAVKLIGW GTSEQGEDYW
301: LIANSWNRGW GEDGYFKIRR GTNECGIEHS VVAGLPSARN LNVELGDAVL DASM

Best Arabidopsis Sequence Match ( AT1G02305.1 )
(BLAST)

001: MADNCIRLLH SASVFFCLGL LISSFNLLQG IAAENLSKQK LTSWILQNEI VKEVNENPNA GWKASFNDRF ANATVAEFKR LLGVKPTPKT EFLGVPIVSH
101: DISLKLPKEF DARTAWSQCT SIGRILDQGH CGSCWAFGAV ESLSDRFCIK YNMNVSLSVN DLLACCGFLC GQGCNGGYPI AAWRYFKHHG VVTEECDPYF
201: DNTGCSHPGC EPAYPTPKCA RKCVSGNQLW RESKHYGVSA YKVRSHPDDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGTNIGGHA VKLIGWGTSD
301: DGEDYWLLAN QWNRSWGDDG YFKIRRGTNE CGIEHGVVAG LPSDRNVVKG ITTSDDLLVS SF

Arabidopsis Description

CATHB2Cathepsin B-like protease 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VC9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.