Factsheet for PGSC0003DMT400066159

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009507
PGSC0003DMT400020793

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	PGSC0003DMT400009507	AT4G16190.1	23738689
AT2G14720.1	PGSC0003DMT400020793	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107130.2.1	Tomato	nucleus	98.73	98.73
VIT_03s0091g00740.t01	Wine grape	plasma membrane	84.44	84.31
Zm00001d012390_P001	Maize	cytosol	11.9	83.33
KRG91109	Soybean	endoplasmic reticulum	81.59	81.46
KRH35666	Soybean	endoplasmic reticulum	81.59	81.46
CDY37219	Canola	extracellular, golgi, plasma membrane	80.63	81.41
CDX81459	Canola	plasma membrane	80.32	81.09
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	80.16	80.93
KRH27575	Soybean	endoplasmic reticulum	80.32	80.57
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	80.16	80.41
CDX93144	Canola	extracellular, plasma membrane, vacuole	77.78	80.33
Zm00001d004678_P001	Maize	cytosol, nucleus, plastid	12.86	80.2
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	79.68	79.94
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	80.0	79.87
CDY65441	Canola	plasma membrane	79.84	79.71
KRH77935	Soybean	endoplasmic reticulum	79.37	77.76
GSMUA_Achr6P16900_001	Banana	cytosol, nucleus, plasma membrane	68.41	75.88
GSMUA_Achr10P...	Banana	cytosol	67.62	75.0
Os10t0346600-00	Rice	plasma membrane	73.33	73.22
Zm00001d014302_P003	Maize	plasma membrane	71.75	73.14
TraesCS1D01G131100.1	Wheat	golgi	72.38	72.04
PGSC0003DMT400077180	Potato	cytosol	68.73	71.69
TraesCS1B01G148200.1	Wheat	plasma membrane	71.9	71.68
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	72.38	71.47
PGSC0003DMT400080213	Potato	plasma membrane	70.0	70.67
Zm00001d014303_P002	Maize	plasma membrane	68.41	69.63
HORVU1Hr1G032780.9	Barley	extracellular	67.78	67.14
PGSC0003DMT400018916	Potato	plasma membrane	61.11	61.6

Protein Annotations

EntrezGene:102586925	Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	InterPro:EGF-like_CS	InterPro:EGF-like_Ca-bd_dom
InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	UniProt:M1CF38	InterPro:PA_domain	PFAM:PF02225	PFAM:PF12662	EnsemblPlantsGene:PGSC0003DMG400025749
PGSC:PGSC0003DMG400025749	EnsemblPlants:PGSC0003DMT400066159	ScanProsite:PS01186	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54
SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000296DA68	RefSeq:XP_006346308.1
InterPro:cEGF	SEG:seg	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025749]

Coordinates

chr1:+:83635766..83642407

Molecular Weight (calculated)

69855.4 Da

IEP (calculated)

5.203

GRAVY (calculated)

-0.432

Length

630 amino acids

Sequence
(BLAST)

001: MGVSKTSKAT IFLGFLWLNL FQSVVGRFVV EKNSLRVVSP DDIKGTYDSA IGNFGIPQYG GSIPGTVVYP KENRKGCRNF EDSGTSFKSK SGAMPTFVLV
101: DRGDCFFALK VWNAQNAGAA AVLVADDVDE RLITMDSPEA DGSSAKYIEN ITIPSALIEK SFAEKLKKAV SAGEMINVNL DWREAVPHPD DRVEYELWTS
201: SNDECGFKCD MLMKYVKDFK GAAQILEKGG YTQFTPHYIT WYCPQAFTVS KQCKSQCINH GRYCAPDPEQ DFSSGYEGKD VVVENLRQLC VFKVANETKK
301: PWVWWDYVTD FQIRCPMKEK KYNKECADAV IKSLGLDSRK IEKCMGDPNA DEDNPVLKEE QDAQIGKGTR GDVTILPTLV VNNRQYRGKL EKGAVLKAIC
401: AGFEETTEPA VCLSDDVETN ECLDNNGGCW QDKAANITAC KDTFRGRVCE CPVVDGVQFK GDGYSSCTAS GRGRCKLNNG GCWHDTRDGH TFSACVDNEE
501: GKCSCPPGFK GDGVKSCEDI DECREKKACQ CPECSCKNTW GSYECSCSGE LLYIRDHDTC ISKRAREVKS AWAAVWAILI GLAMAGGGAY LVYKYRLRSY
601: MDSEIRAIMA QYMPLDSQSE VQNHVNEDHA

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.