Factsheet for PGSC0003DMT400077180

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015670.2.1	Tomato	plastid	96.85	94.2
PGSC0003DMT400080213	Potato	plasma membrane	89.07	86.22
KRH00437	Soybean	endoplasmic reticulum, golgi, plasma membrane	75.99	74.15
Bra028917.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	67.22	73.55
KRH40723	Soybean	extracellular, golgi, plasma membrane	75.33	72.92
KRH48733	Soybean	extracellular, golgi, plasma membrane	74.17	72.03
CDY62643	Canola	mitochondrion	11.26	71.58
KRH64888	Soybean	endoplasmic reticulum, golgi, plasma membrane	73.01	70.67
CDY04821	Canola	mitochondrion, plasma membrane	73.84	70.24
AT2G30290.2	Thale cress	endoplasmic reticulum, golgi, plasma membrane	73.18	68.95
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	71.69	68.73
CDY38158	Canola	cytosol, plasma membrane	32.45	64.9
CDY62642	Canola	cytosol, plasma membrane, plastid	14.9	64.29
CDY38157	Canola	mitochondrion	37.25	60.81
PGSC0003DMT400018916	Potato	plasma membrane	61.42	59.36
CDY42565	Canola	cytosol	9.77	57.28
CDY70452	Canola	cytosol	9.77	57.28
CDX99194	Canola	cytosol	9.77	57.28
Bra039875.1-P	Field mustard	cytosol	9.77	57.28
Bra039898.1-P	Field mustard	cytosol	35.76	56.4
Bra009645.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plastid	15.56	52.81
HORVU5Hr1G046470.1	Barley	cytosol, mitochondrion	4.97	51.72
CDY10980	Canola	cytosol	14.24	48.31
Zm00001d053767_P001	Maize	mitochondrion	10.1	43.57
VIT_11s0052g00060.t01	Wine grape	extracellular	9.77	38.56

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.40.30.10	Gene3D:3.50.30.30	ProteinID:ABC01915	ProteinID:ABC01915.1
EMBL:DQ294283	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:M1CY07	InterPro:PA_domain	PFAM:PF02225
EnsemblPlantsGene:PGSC0003DMG400030017	PGSC:PGSC0003DMG400030017	EnsemblPlants:PGSC0003DMT400077180	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF57
SMART:SM00179	SUPFAM:SSF52025	TMHMM:TMhelix	UniParc:UPI0002968D33	:	:

Description

Vacuolar sorting receptor protein PV72 [Source:PGSC_GENE;Acc:PGSC0003DMG400030017]

Coordinates

chr9:-:18598486..18607646

Molecular Weight (calculated)

67291.5 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.444

Length

604 amino acids

Sequence
(BLAST)

001: MGRFVVEKNS LRVTSPDSIK EVYECAIGNF GVPQYGGTMV GNVMYPKTNQ KSCKNFSDFD IFYKSKPGGM PVFLLVDRGD CFFTLKAWNA QQAGAGAILV
101: ADDRVEPLIT MDTPEEEDAK ADYLQDITIP SALISKSLGD SIKKELSKGE MVNINLDWRE ALPHPDDRVE YEFWTNSNDE CGPKCESQRE FVKNFKGAAQ
201: ILEQKGYTQF SPHYITWYCP EAFILSKQCK SQCINHGRYC APDPEQDFSK GYDGKDVVLQ NLRQACFFKV ANESGKPWLW WDYVTDFAIR CPMKEKKYTK
301: ECADQVIKSL GFDVKQIDNC VGDPEADTDN PVLKAEQDTQ IGKGARGDVT ILPTLVINNR QYRGKLDKGA VLKAICSGFE ETTEPAICLT EEIETNECLE
401: SNGGCWQDKA ANITACQDTF RGRVCECPVV QGVKFVGDGY THCEASGALR CEINNGGCWK GTQNGRAYSA CIDDHTKGCK CPPGFKGDGV NSCEDIDECK
501: EKLACQCAEC KCKNTWGSYD CSCNANLLYM HEHDTCISKD AKSEFSWGLV WTIILGLAVA GVSAYAVYKY RIRRYMDSEI RAIMAQYMPL DQGEGATNVP
601: HGNV

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.