Factsheet for PGSC0003DMT400080213

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074980.1.1	Tomato	extracellular	97.92	97.92
PGSC0003DMT400077180	Potato	cytosol	86.22	89.07
Bra028917.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	65.71	74.28
KRH00437	Soybean	endoplasmic reticulum, golgi, plasma membrane	73.08	73.67
KRH48733	Soybean	extracellular, golgi, plasma membrane	72.28	72.51
KRH40723	Soybean	extracellular, golgi, plasma membrane	72.12	72.12
CDY04821	Canola	mitochondrion, plasma membrane	72.76	71.5
KRH64888	Soybean	endoplasmic reticulum, golgi, plasma membrane	71.47	71.47
AT2G30290.2	Thale cress	endoplasmic reticulum, golgi, plasma membrane	72.76	70.83
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	70.67	70.0
CDY62643	Canola	mitochondrion	10.58	69.47
CDY38158	Canola	cytosol, plasma membrane	31.25	64.57
CDY62642	Canola	cytosol, plasma membrane, plastid	14.42	64.29
CDY38157	Canola	mitochondrion	37.18	62.7
PGSC0003DMT400018916	Potato	plasma membrane	59.29	59.2
CDY42565	Canola	cytosol	9.62	58.25
CDY70452	Canola	cytosol	9.62	58.25
CDX99194	Canola	cytosol	9.62	58.25
Bra039875.1-P	Field mustard	cytosol	9.62	58.25
Bra039898.1-P	Field mustard	cytosol	35.42	57.7
HORVU5Hr1G046470.1	Barley	cytosol, mitochondrion	5.29	56.9
Bra009645.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plastid	14.9	52.25
CDY10980	Canola	cytosol	14.1	49.44
Zm00001d053767_P001	Maize	mitochondrion	10.1	45.0
VIT_11s0052g00060.t01	Wine grape	extracellular	9.46	38.56

Protein Annotations

EntrezGene:102594404	Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
UniProt:M1D357	InterPro:PA_domain	PFAM:PF02225	EnsemblPlantsGene:PGSC0003DMG400031224	PGSC:PGSC0003DMG400031224	EnsemblPlants:PGSC0003DMT400080213
ScanProsite:PS01187	PFscan:PS51257	PANTHER:PTHR22765	PANTHER:PTHR22765:SF57	SMART:SM00179	SUPFAM:SSF52025
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0002953712	RefSeq:XP_006362349.1	SEG:seg	:

Description

Vacuolar sorting receptor protein PV72 [Source:PGSC_GENE;Acc:PGSC0003DMG400031224]

Coordinates

chr10:+:48813669..48820645

Molecular Weight (calculated)

69192.1 Da

IEP (calculated)

5.459

GRAVY (calculated)

-0.378

Length

624 amino acids

Sequence
(BLAST)

001: MKEKLGFLVC VWFIVIGSCL GRFVVEKNSL RVTSPDSIKD VYECAIGNFG VPQYGGTMVG IVVYPKANQK SCKDFADSDI SFKTKAGGMP VFVLVDRGDC
101: YFTLKAWNAQ KAGAAAILVA DDRNEPLITM DTPEEEDAKA DYLQNITIPS ALISQSLGDS IKKQLSKGEM VNINLDWREA LPHPDERVEY EFWTNSNDEC
201: GPKCESQREF VKNFKGAAQI LEQKGYTQFS PHYITWYCPE AFILSKQCKS QCINHGRYCA PDPEQDFSKG YDGKDVVLQN LRQACFHKVA NESGKPWLWW
301: DYVTDFGIRC PMKEKKYNKE CADQVIKSLG FDVKQIDKCV GDPEADADNP VLKAEQEAQI GKNSRGDVTI LPTLVINNRQ YRGKLDKGAV LKAICSGFEE
401: TTEPAICLTD DIQTNECLES NGGCWQDKAA NITACRDTFR GKVCECPTVQ GVKFVGDGYS HCEASGALRC GLNNGGCWKG TKDGRTFSAC IDDHTKGCKC
501: PPGFKGDGVN VCDDIDECKE RLACQCPDCK CKNTWGGYQC SCSGNLLYMQ EHDTCIGNDG KAAFSWGLVW VIILGLAVAG VGAYAVYKYR IRRYMDSEIR
601: AIMAQYMPLD NQGEVPNHIS HGNV

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.