Factsheet for Solyc10g074980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
golgi 6
plasma membrane 7
endoplasmic reticulum 5
vacuole 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080213	Potato	plasma membrane	97.92	97.92
Solyc09g015670.2.1	Tomato	plastid	85.9	86.31
KRH00437	Soybean	endoplasmic reticulum, golgi, plasma membrane	73.24	73.83
Bra028917.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	65.22	73.73
KRH40723	Soybean	extracellular, golgi, plasma membrane	72.28	72.28
KRH48733	Soybean	extracellular, golgi, plasma membrane	71.96	72.19
KRH64888	Soybean	endoplasmic reticulum, golgi, plasma membrane	71.15	71.15
CDY04821	Canola	mitochondrion, plasma membrane	72.28	71.02
AT2G30290.2	Thale cress	endoplasmic reticulum, golgi, plasma membrane	72.12	70.2
Solyc01g107130.2.1	Tomato	nucleus	69.39	68.73
CDY62643	Canola	mitochondrion	10.42	68.42
CDY62642	Canola	cytosol, plasma membrane, plastid	14.58	65.0
CDY38158	Canola	cytosol, plasma membrane	31.41	64.9
CDY38157	Canola	mitochondrion	37.02	62.43
Solyc02g081970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	59.13	57.84
Bra039898.1-P	Field mustard	cytosol	35.26	57.44
CDY70452	Canola	cytosol	9.46	57.28
CDY42565	Canola	cytosol	9.46	57.28
CDX99194	Canola	cytosol	9.46	57.28
Bra039875.1-P	Field mustard	cytosol	9.46	57.28
HORVU5Hr1G046470.1	Barley	cytosol, mitochondrion	5.29	56.9
Bra009645.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plastid	15.06	52.81
CDY10980	Canola	cytosol	13.78	48.31
Zm00001d053767_P001	Maize	mitochondrion	10.1	45.0
VIT_11s0052g00060.t01	Wine grape	extracellular	9.29	37.91

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:K4D1U0
InterPro:PA_domain	PFAM:PF02225	ScanProsite:PS01187	PFscan:PS51257	PANTHER:PTHR22765	PANTHER:PTHR22765:SF57
SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc10g074980.1	EnsemblPlants:Solyc10g074980.1.1	TMHMM:TMhelix
UniParc:UPI0002769BE2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:58687653..58693369

Molecular Weight (calculated)

69212.1 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.380

Length

624 amino acids

Sequence
(BLAST)

001: MKEKLGFLVC VWFLVIGSCL GRFVVEKNSL RVTSPDSIKN VYECAIGNFG VPQYGGTMVG IVMYPKANQK SCKDFADSDI SFKTKAGGMP VFVLVDRGDC
101: YFTLKAWNAQ KAGAAAILVA DDRNEPLITM DTPEEEDAKA DYLQNITIPS ALISQSLGDS IKKQLSKGEM VNINLDWREA LPHPDERVEY EFWTNSNDEC
201: GPKCESQREF VKNFKGAAQI LEQKGYTQFS PHYITWYCPE AFILSKQCKS QCINHGRYCA PDPEQDFSKG YDGKDVVLQN LRQACFYKVA NDSGKPWLWW
301: DYVTDFGIRC PMKEKKYDKE CADQVITSLG FDVKQIDKCV GDPEADADNP ILKAEQEAQI GKNSRGDVTI LPTLVINNRQ YRGKLDKGAV LKAICSGFEE
401: TTEPAICLTD DIQTNECLES NGGCWQDTAA NITACRDTFR GKVCECPTVQ GVKFVGDGYS HCEASGALRC GLNNGGCWKG TKDGRTYSAC IDDHTKGCKC
501: PPGFKGDGVN LCEDIDECKE RLACQCPDCK CKNTWGGYQC SCSGNLLYMQ EHDTCIGNDG KAAFSWGLVW VIILGLAVAG AGAYAVYKYR IRRYMDSEIR
601: AIMAQYMPLD NQGEVPNHIS HGNV

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [extracellular,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.