Factsheet for Solyc02g081970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018916	Potato	plasma membrane	95.61	97.6
VIT_01s0011g01050.t01	Wine grape	extracellular, plasma membrane, vacuole	76.65	77.62
KRH37180	Soybean	plasma membrane	73.98	75.64
KRH12166	Soybean	plasma membrane	73.82	75.0
CDY50060	Canola	plasma membrane	68.97	69.95
Bra013445.1-P	Field mustard	plasma membrane	68.65	69.41
CDX78975	Canola	plasma membrane	68.65	69.41
AT4G20110.2	Thale cress	plasma membrane	68.03	69.11
GSMUA_Achr3P23680_001	Banana	plasma membrane	60.34	68.38
Os06t0664300-01	Rice	plasma membrane	66.77	66.88
GSMUA_AchrUn_...	Banana	plasma membrane	61.44	66.67
Zm00001d046945_P001	Maize	plasma membrane	64.11	65.02
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	10.03	64.65
TraesCS7B01G387100.1	Wheat	extracellular, plasma membrane	63.79	64.6
TraesCS7D01G471300.1	Wheat	golgi	63.79	64.6
TraesCS7D01G145700.2	Wheat	cytosol	30.25	64.33
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	63.01	64.11
Os04t0611400-01	Rice	plasma membrane	61.91	62.5
HORVU7Hr1G109180.2	Barley	mitochondrion, plasma membrane, vacuole	63.95	62.2
KXG27024	Sorghum	plasma membrane	59.56	62.09
Solyc01g107130.2.1	Tomato	nucleus	60.66	61.43
TraesCS2A01G425800.2	Wheat	mitochondrion	60.97	60.69
TraesCS2D01G423700.1	Wheat	golgi	60.81	60.53
TraesCS2B01G446100.1	Wheat	plasma membrane	60.81	60.44
Solyc09g015670.2.1	Tomato	plastid	58.15	59.74
Solyc10g074980.1.1	Tomato	extracellular	57.84	59.13
KXG20551	Sorghum	plasma membrane, plastid	64.89	54.98
TraesCS6A01G310600.1	Wheat	cytosol	27.59	46.44
TraesCS7A01G436000.1	Wheat	mitochondrion	15.05	45.5
GSMUA_Achr7P03630_001	Banana	plasma membrane	58.62	36.96
HORVU2Hr1G099640.3	Barley	extracellular	17.71	17.57

Protein Annotations

MapMan:22.5.2.1	Gene3D:3.50.30.30	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:K4BA67	InterPro:PA_domain
PFAM:PF02225	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF56	SMART:SM00179	SUPFAM:SSF52025
SignalP:SignalP-TM	EnsemblPlantsGene:Solyc02g081970.2	EnsemblPlants:Solyc02g081970.2.1	TMHMM:TMhelix	UniParc:UPI0001EF048A	SEG:seg

Description

No Description!

Coordinates

chr2:-:45718880..45724644

Molecular Weight (calculated)

71113.4 Da

IEP (calculated)

5.420

GRAVY (calculated)

-0.372

Length

638 amino acids

Sequence
(BLAST)

001: MLVPLHSPAN MAALFFRLLF FSLIVSNVVL VQARFIVEKN SISVLSPYSM HSKHDASIGN FGVPDYGGSL VGTVVYPSKG ANGCAEFDGD KPFKSKGHRP
101: NILLLDRGDC YFALKVWNGQ QAGAAAVLVA DSIDEALITM DSPEESTDAN GYIEKIGIPS ALIEKSFGDA LKEALKKGEE VVIKMDWTES MPHPDQRVEY
201: ELWTNSNDEC GVRCDEQMNF IKNFKGHAQI LEKGGYTMFT PHYITWYCPE AFILSSQCKS QCINHGRYCA PDPEQDFGEG YQGKDVVFEN LRQLCVHRVA
301: NESSRSWVWW DYVTDFHIRC SMKQKRYSKE CAEEVMKSLD LPVDKIKKCM GDPEANVEND VLKTEQDLQV GRGPRGDVTI LPTMVINDIQ YRGKLERTAV
401: LKAICAGFKE TTEPSICLSG DLETNQCLER NGGCWRDPKS NITACKDTYR GRVCECPLVN GVQYKGDGYT SCEAVGPGRC SVNNGGCWSE TRNGQTYSAC
501: SEGELSGCKC PYGFKGDGHK CEDVDECKEG LVCQCDGCSC KDTWGGFECK CKGNQLYIME HDTCIERHSS KIGRVLMFSF LAIAVGAGLA GYTFYKYRLR
601: SYMDSEIMAI MSQYMPLDNH NQNQVVHHEA EPLQQSSV

Best Arabidopsis Sequence Match ( AT1G30900.1 )
(BLAST)

001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A

Arabidopsis Description

VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.