CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34940.1	EER91265	AT4G26630.1	25387881
AT2G34940.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046945_P001	Maize	plasma membrane	79.02	94.59
Os06t0664300-01	Rice	plasma membrane	72.24	85.4
TraesCS7B01G387100.1	Wheat	extracellular, plasma membrane	69.32	82.86
TraesCS7D01G471300.1	Wheat	golgi	68.92	82.38
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	68.39	82.14
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	10.49	79.8
HORVU7Hr1G109180.2	Barley	mitochondrion, plasma membrane, vacuole	68.66	78.81
TraesCS7D01G145700.2	Wheat	cytosol	30.68	77.0
GSMUA_AchrUn_...	Banana	plasma membrane	55.25	70.75
KRH37180	Soybean	plasma membrane	55.11	66.51
VIT_01s0011g01050.t01	Wine grape	extracellular, plasma membrane, vacuole	55.51	66.35
KRH12166	Soybean	plasma membrane	55.11	66.08
PGSC0003DMT400018916	Potato	plasma membrane	54.85	66.08
Solyc02g081970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	54.98	64.89
KXG27024	Sorghum	plasma membrane	52.59	64.71
Bra023151.1-P	Field mustard	plasma membrane	53.65	64.23
CDY02347	Canola	plasma membrane	53.65	64.23
CDY43178	Canola	plasma membrane	53.52	64.07
AT1G30900.1	Thale cress	extracellular, plasma membrane, vacuole	52.86	63.07
CDX78975	Canola	plasma membrane	51.53	61.49
CDY50060	Canola	plasma membrane	51.26	61.37
AT4G20110.2	Thale cress	plasma membrane	51.13	61.31
Bra013445.1-P	Field mustard	plasma membrane	51.26	61.17
EER99915	Sorghum	plasma membrane	50.86	60.22
EES09132	Sorghum	plasma membrane	49.93	59.97
Bra039877.1-P	Field mustard	cytosol	26.03	59.39
CDY12449	Canola	cytosol	22.44	58.28
EER94904	Sorghum	extracellular, plasma membrane, vacuole	48.47	58.03
AT2G34940.1	Thale cress	plasma membrane	47.54	57.93
Bra021940.1-P	Field mustard	plasma membrane	48.07	57.74
CDY64650	Canola	plasma membrane	47.94	57.48
CDY43647	Canola	plasma membrane	47.81	57.32
TraesCS6A01G310600.1	Wheat	cytosol	28.29	56.2
TraesCS7A01G436000.1	Wheat	mitochondrion	13.81	49.29
GSMUA_Achr7P03630_001	Banana	plasma membrane	55.38	41.21

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	UniProt:A0A194YLT5	InterPro:EGF_Ca-bd_CS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlants:KXG20551
ProteinID:KXG20551	ProteinID:KXG20551.1	InterPro:PA_domain	PFAM:PF02225	ScanProsite:PS01187	PANTHER:PTHR22765
PANTHER:PTHR22765:SF56	EnsemblPlantsGene:SORBI_3010G219800	SUPFAM:SSF52025	TMHMM:TMhelix	UniParc:UPI0007F27CFC	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:56197329..56202320

Molecular Weight (calculated)

83565.3 Da

IEP (calculated)

7.168

GRAVY (calculated)

-0.382

Length

753 amino acids

Sequence
(BLAST)

001: MLDTNAPDQT PILYDSSNLP PSSSRRPNSK SPLRLLRTCT DQLQYISLPF SQPPTPGFAW LVATRRRDRR IALSLLQVFF LFPPSSSRCW GRERGRLAGA
101: AADRTYGQQL IGRSEMAARR APWLAGGLVA AVAVQLLMVA VPVRGRFVVE KSSVRVLAPE HIRGHHDAAI GNFGVPDYGG TLTGVVIYPD KKATGCDEFD
201: TKFKAKSRRP VILLLDRGEC YFALKAWNAQ RAGAAAVLIA DSVDEQLLTM DSPEASAGTE YVDKINIPSA LVNRAFGESL KKMAQKVASA AGAGEEVIVK
301: LDWRESMPHP DERVEYELWT NSNDECGPRC DEQMAFVRGF RGHAQLLERG GYARFTPHYI TWYCPEAFRL TQQCKSQCIN HGRYCAPDPE GDFGAGYEGK
401: DVVVENLRQL CVHRVANDTG RPWAWWDYVM DYKIRCSMKE KKYTKTCAED VVTALGLDLK KVLECMGDPE ADADNAVLSK EQEDQIGSGS RGDVTILPTL
501: VINNVQYRGK LERTAVLRAV CAGFKEGTEP RVCLSHDIET NECLHRNGGC WRDEATNVTA CQDTYRGRVC ECPVVNGVRY EGDGYTDCKA IGPGRCALNH
601: GGCWSETRGQ QTFSACSETA LTGCRCPSGF HGDGHKCEDL DECREKLACT CPGCQCKNTW GNYECKCKGN QLYIRGEDVC IANSMSKLGW FITIAAVACV
701: VGIGVAGYVF YKYRLRSYMD SEIMSIMSQY MPLDSQNNEN QPLRQHDSEA LRH

Best Arabidopsis Sequence Match ( AT1G30900.1 )
(BLAST)

001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A

Arabidopsis Description

VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.