Factsheet for VIT_01s0011g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018916	Potato	plasma membrane	76.67	77.28
Solyc02g081970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	77.62	76.65
KRH37180	Soybean	plasma membrane	75.56	76.28
KRH12166	Soybean	plasma membrane	75.56	75.8
AT4G20110.2	Thale cress	plasma membrane	69.68	69.9
CDY50060	Canola	plasma membrane	69.68	69.79
GSMUA_Achr3P23680_001	Banana	plasma membrane	62.22	69.63
CDX78975	Canola	plasma membrane	69.68	69.57
Bra013445.1-P	Field mustard	plasma membrane	69.37	69.26
GSMUA_AchrUn_...	Banana	plasma membrane	63.97	68.54
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	10.63	67.68
Os06t0664300-01	Rice	plasma membrane	68.41	67.66
TraesCS7B01G387100.1	Wheat	extracellular, plasma membrane	65.87	65.87
TraesCS7D01G471300.1	Wheat	golgi	65.71	65.71
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	65.4	65.71
Zm00001d046945_P001	Maize	plasma membrane	65.4	65.5
TraesCS7D01G145700.2	Wheat	cytosol	30.63	64.33
HORVU7Hr1G109180.2	Barley	mitochondrion, plasma membrane, vacuole	65.87	63.26
Os04t0611400-01	Rice	plasma membrane	62.7	62.5
VIT_03s0091g00740.t01	Wine grape	plasma membrane	62.22	62.12
VIT_08s0058g01360.t01	Wine grape	plasma membrane	60.63	61.22
KXG27024	Sorghum	plasma membrane	59.37	61.11
TraesCS2B01G446100.1	Wheat	plasma membrane	61.11	59.97
TraesCS2A01G425800.2	Wheat	mitochondrion	60.95	59.91
TraesCS2D01G423700.1	Wheat	golgi	60.95	59.91
KXG20551	Sorghum	plasma membrane, plastid	66.35	55.51
TraesCS6A01G310600.1	Wheat	cytosol	28.1	46.7
TraesCS7A01G436000.1	Wheat	mitochondrion	14.44	43.13
VIT_11s0052g00060.t01	Wine grape	extracellular	9.37	38.56
GSMUA_Achr7P03630_001	Banana	plasma membrane	61.9	38.54
VIT_08s0040g00700.t01	Wine grape	plasma membrane	9.84	37.35
HORVU2Hr1G099640.3	Barley	extracellular	18.25	17.88

Protein Annotations

EntrezGene:100252664	wikigene:100252664	Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	ProteinID:CCB51041
ProteinID:CCB51041.1	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	UniProt:F6HEY1	EMBL:FN595752	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016787	GO:GO:0016788	GO:GO:0020037	GO:GO:0042744
GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	EntrezGene:LOC100252664	wikigene:LOC100252664	InterPro:PA_domain
PFAM:PF02225	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF56	SMART:SM00179	SUPFAM:SSF52025
SignalP:SignalP-noTM	TIGR:TC54199	TIGR:TC62825	TMHMM:TMhelix	UniParc:UPI00015C8205	ArrayExpress:VIT_01s0011g01050
EnsemblPlantsGene:VIT_01s0011g01050	EnsemblPlants:VIT_01s0011g01050.t01	unigene:Vvi.1713	RefSeq:XP_002275462	RefSeq:XP_002275462.2	SEG:seg

Description

No Description!

Coordinates

chr1:+:924701..929880

Molecular Weight (calculated)

70283.4 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.403

Length

630 amino acids

Sequence
(BLAST)

001: MAGLRHQLGL FLVVGMVVMR CAWGRFVVEK NSISVLAPLD MRSKHDGAIG NFGIPEYGGS MVGSVVYPQK GSFGCVPFEG DKPFKSRSSP TTILLLDRGE
101: CYFALKAWNA QQAGAAAVLV ADSIDEPLIT MDSPEESTDS DGYVEKLRIP SALIDRAFGE NLKQALKKGQ DVLVKLDWTE SMPHPDERVE YELWTNSNDE
201: CGTRCDEQMN FVQNFKGHAQ ILEKLGYTQF TPHYITWYCP QAFVLSNQCK SQCINHGRYC APDPEQNFGE GYQGKDVVFE NLRQLCVHRV ANESNRSWVW
301: WDYVTDFHIR CSMKEKRYSK ECAEDVMKSL DLPIDKIKKC MGNPEADVDN EVLKTEQELQ VGRGSRGDVT ILPTLVVNNI QYRGKLERTA VLKAICAGFK
401: ETTEPQVCLS GDLETNECLE RHGGCWHDSR SNITACKDTY RGRVCKCPVV DGVQYRGDGY VSCEAFGPAR CAMNNGGCWS DTKNGKTFSA CSDSEVTGCQ
501: CPHGFQGDGH KCEDVNECKE RLACQCDGCT CKNTWGGYDC KCKGNLLYIM EQDTCIERSG SKFGWSLGFL VLAALVGAGI AGYIFYKYRL RSYMDSEIMA
601: IMSQYMPLDN HNNNNEVPTE AQALRPGSSV

Best Arabidopsis Sequence Match ( AT1G30900.1 )
(BLAST)

001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A

Arabidopsis Description

VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.