Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr9P09250_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34940.1 | GSMUA_Achr9P09250_001 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plasma membrane | 75.13 | 71.94 |
| VIT_01s0011g01050.t01 | Wine grape | extracellular, plasma membrane, vacuole | 69.63 | 62.22 |
| PGSC0003DMT400018916 | Potato | plasma membrane | 68.21 | 61.44 |
| Solyc02g081970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 68.38 | 60.34 |
| KRH37180 | Soybean | plasma membrane | 66.79 | 60.26 |
| KRH12166 | Soybean | plasma membrane | 66.43 | 59.55 |
| CDY12449 | Canola | cytosol | 30.37 | 58.97 |
| Bra023151.1-P | Field mustard | plasma membrane | 65.01 | 58.19 |
| CDY02347 | Canola | plasma membrane | 65.01 | 58.19 |
| CDY43178 | Canola | plasma membrane | 65.01 | 58.19 |
| Bra039877.1-P | Field mustard | cytosol | 34.1 | 58.18 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 65.19 | 58.16 |
| CDY50060 | Canola | plasma membrane | 64.3 | 57.55 |
| CDX78975 | Canola | plasma membrane | 64.12 | 57.21 |
| Bra013445.1-P | Field mustard | plasma membrane | 64.12 | 57.21 |
| AT4G20110.2 | Thale cress | plasma membrane | 63.59 | 57.01 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, plasma membrane | 59.86 | 54.27 |
| GSMUA_Achr7P22040_001 | Banana | extracellular, plasma membrane | 59.86 | 54.18 |
| AT2G34940.1 | Thale cress | plasma membrane | 58.79 | 53.56 |
| GSMUA_Achr10P... | Banana | cytosol | 53.64 | 53.17 |
| GSMUA_Achr6P16900_001 | Banana | cytosol, nucleus, plasma membrane | 53.46 | 52.99 |
| Bra021940.1-P | Field mustard | plasma membrane | 57.9 | 51.99 |
| CDY64650 | Canola | plasma membrane | 57.55 | 51.59 |
| CDY43647 | Canola | plasma membrane | 57.37 | 51.43 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi, plasma membrane | 48.13 | 51.23 |
| GSMUA_Achr7P03630_001 | Banana | plasma membrane | 74.78 | 41.6 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr3G23680_001 |
| EnsemblPlants:GSMUA_Achr3P23680_001 | EnsemblPlants:GSMUA_Achr3T23680_001 | UniProt:M0SH84 | InterPro:PA_domain | PFAM:PF02225 | ScanProsite:PS01187 |
| PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | SMART:SM00179 | SUPFAM:SSF52025 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0002955668 | SEG:seg | : | : | : | : |
Description
Vacuolar-sorting receptor 7 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23680_001]
Coordinates
chr3:-:24453127..24456670
Molecular Weight (calculated)
61857.0 Da
IEP (calculated)
4.711
GRAVY (calculated)
-0.319
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLREQLAV LAVLLAVAIR LAAGRFVVEI ESISVVSPTS LRGHHDAAIA NFGVPNYGGT LTGVVVYPDK GRTGCHAFGG DPFRSKSGRP VILLVDRGDC
101: YFALKAYNGQ QNGAAAVIVA DTIDEPLLTM DAPEEDNDNE YVEKINIPSA LVTQTFGNSL KEALAKGAEE VVVKLDWTES MPHPDERVEY ELWTNSNDEC
201: GDRCDEQTEF VANFKGHAQL LEKGGFTRFT PHYITWYCAP DPEQDFREGC SMKEKKYSKE CAEHVVRSLG LPSDKISKCM GDPEADVDND VLRTEQLLQI
301: GHGTRGDVTI LPTLVINNVQ YRGKLERTAV LKAICAGFKE STEPSVCLNP DIETNECLDS NGGCWQDSEL NITACKDTFR GRVCQCPVVN NVQFQGDGYN
401: SCIPVGPGRC AINNGGCWSD TKNGQNFSAC PDSDLTGCRC PYGFHGDGYK CEDVDECKEK LACNCPECSC KNTWGGYDCK CKGNLLYIKS EDTCIAKSAS
501: KFGWLMTLFI LACVVGAGTA AYVFYKYRLR SYMDSEIMAI MSQYMPLDNH KNETRPLRED TAA
101: YFALKAYNGQ QNGAAAVIVA DTIDEPLLTM DAPEEDNDNE YVEKINIPSA LVTQTFGNSL KEALAKGAEE VVVKLDWTES MPHPDERVEY ELWTNSNDEC
201: GDRCDEQTEF VANFKGHAQL LEKGGFTRFT PHYITWYCAP DPEQDFREGC SMKEKKYSKE CAEHVVRSLG LPSDKISKCM GDPEADVDND VLRTEQLLQI
301: GHGTRGDVTI LPTLVINNVQ YRGKLERTAV LKAICAGFKE STEPSVCLNP DIETNECLDS NGGCWQDSEL NITACKDTFR GRVCQCPVVN NVQFQGDGYN
401: SCIPVGPGRC AINNGGCWSD TKNGQNFSAC PDSDLTGCRC PYGFHGDGYK CEDVDECKEK LACNCPECSC KNTWGGYDCK CKGNLLYIKS EDTCIAKSAS
501: KFGWLMTLFI LACVVGAGTA AYVFYKYRLR SYMDSEIMAI MSQYMPLDNH KNETRPLRED TAA
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Arabidopsis Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.