CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	plasma membrane

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78975	Canola	plasma membrane	97.14	96.83
AT4G20110.2	Thale cress	plasma membrane	88.71	88.85
PGSC0003DMT400018916	Potato	plasma membrane	69.48	69.92
VIT_01s0011g01050.t01	Wine grape	extracellular, plasma membrane, vacuole	69.79	69.68
KRH37180	Soybean	plasma membrane	68.84	69.39
Solyc02g081970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	69.95	68.97
KRH12166	Soybean	plasma membrane	68.84	68.95
CDY02347	Canola	plasma membrane	68.2	68.2
CDY43178	Canola	plasma membrane	68.04	68.04
GSMUA_Achr3P23680_001	Banana	plasma membrane	57.55	64.3
GSMUA_AchrUn_...	Banana	plasma membrane	59.3	63.44
Os06t0664300-01	Rice	plasma membrane	64.07	63.27
CDY62643	Canola	mitochondrion	9.38	62.11
CDY12449	Canola	cytosol	28.62	62.07
Zm00001d046945_P001	Maize	plasma membrane	61.84	61.84
CDY64650	Canola	plasma membrane	61.69	61.78
TraesCS7A01G281400.1	Wheat	cytosol, nucleus, plastid	9.7	61.62
TraesCS7A01G483700.1	Wheat	golgi, plasma membrane	61.05	61.24
CDY37219	Canola	extracellular, golgi, plasma membrane	60.73	61.22
CDY43647	Canola	plasma membrane	61.05	61.15
CDX81459	Canola	plasma membrane	60.57	61.06
CDX93144	Canola	extracellular, plasma membrane, vacuole	59.14	60.98
TraesCS7D01G471300.1	Wheat	golgi	60.89	60.79
Os04t0611400-01	Rice	plasma membrane	61.05	60.76
TraesCS7B01G387100.1	Wheat	extracellular, plasma membrane	60.73	60.63
KXG27024	Sorghum	plasma membrane	58.51	60.13
CDY65441	Canola	plasma membrane	60.25	60.06
TraesCS7D01G145700.2	Wheat	cytosol	28.62	60.0
TraesCS2A01G425800.2	Wheat	mitochondrion	60.73	59.59
TraesCS2D01G423700.1	Wheat	golgi	60.41	59.28
TraesCS2B01G446100.1	Wheat	plasma membrane	60.25	59.03
CDX91478	Canola	plasma membrane	57.87	58.71
CDX78128	Canola	plasma membrane	58.03	58.4
CDX73599	Canola	plasma membrane	58.03	58.4
CDY60753	Canola	plasma membrane	57.55	58.39
HORVU7Hr1G109180.2	Barley	mitochondrion, plasma membrane, vacuole	60.89	58.38
CDY13344	Canola	plasma membrane	57.87	58.24
CDX67539	Canola	plasma membrane	57.71	58.08
CDY70452	Canola	cytosol	9.38	57.28
CDY42565	Canola	cytosol	9.38	57.28
CDX99194	Canola	cytosol	9.38	57.28
CDY04821	Canola	mitochondrion, plasma membrane	55.48	54.96
CDY38158	Canola	cytosol, plasma membrane	25.28	52.65
KXG20551	Sorghum	plasma membrane, plastid	61.37	51.26
CDY62642	Canola	cytosol, plasma membrane, plastid	10.97	49.29
CDY10980	Canola	cytosol	13.51	47.75
CDY38157	Canola	mitochondrion	27.82	47.3
TraesCS6A01G310600.1	Wheat	cytosol	27.98	46.44
CDY22565	Canola	nucleus	7.79	42.98
TraesCS7A01G436000.1	Wheat	mitochondrion	14.31	42.65
GSMUA_Achr7P03630_001	Banana	plasma membrane	56.76	35.28
HORVU2Hr1G099640.3	Barley	extracellular	16.53	16.17

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	GO:A0A078IGP0	UniProt:A0A078IGP0	EnsemblPlants:CDY50060
ProteinID:CDY50060	ProteinID:CDY50060.1	InterPro:EGF-like_Ca-bd_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00095822001	InterPro:PA_domain	PFAM:PF02225
PFAM:PF12662	PANTHER:PTHR22765	PANTHER:PTHR22765:SF56	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EF0264	InterPro:cEGF	SEG:seg	:	:

Description

BnaCnng18670DBnaCnng18670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGP0]

Coordinates

chrLK032877:+:53127..56265

Molecular Weight (calculated)

70133.4 Da

IEP (calculated)

6.487

GRAVY (calculated)

-0.373

Length

629 amino acids

Sequence
(BLAST)

001: MSLVNGRALT SLLAALTMIA MVVVDARFVV EKESIRVLNP EEMRSKHDGS IANFGLPDYG GFLIGAVVYP DSKTDGCSAF GKTFKPKFPR PTILLLDRGG
101: CYFALKAWNA QQAGAAAVLV ADNKDEPLLT MDSPEESRDA DGFIEKLTIP SVLIEKSFGD SLREGFKKGK NIVLKLDWRE SVPHPDQRVE YELWTNSNDE
201: CGARCDEQMD FVKNFKGHAQ ILEKGGFTAF TPHYITWFCP FQFVNSPQCK SQCINHGRYC APDPEKNFRE GYEGKDVVFE NLRQLCVHRV ANESSRSWVW
301: WDYVTDFHAR CSMKEKKYSI ECAENVIKSL NLPIEKVKKC MGDPEADTDN EVLKMEQVVQ LGRGERGDVT ILPTLVINNA QYRGRLERTA VLKAICAGFN
401: ETSDPPICLN TGLETNECLQ HNGGCWQDKR ANMTACKDTF RGRICECPIV KGVQYKGDGY TSCTPYGPAR CTINNGGCWS DTRNGATFSA CSNSMSTGCK
501: CPPGFKGDGL TCEDINECKQ GLVCQCSGCK CKNTWGGHSC SCSGDRLYIY DQDTCIERNG SKTAWWLTLL ILAIVAGAGL AGYLFYKYRF RSYMDSEIMT
601: IMSQYMPLES QRAREVPSEA EPFTHNSTA

Best Arabidopsis Sequence Match ( AT4G20110.1 )
(BLAST)

001: MGLVNGRASL TFLLAALTII AMVVEARFVV EKESISVLNP EEMRSKHDGS IANFGLPDYG GFLIGSVVYP DSKTDGCSAF GKTFKPKFPR PTILLLDRGG
101: CYFALKAWHA QQAGAAAVLV ADNVDEPLLT MDSPEESKDA DGFIEKLTIP SVLIDKSFGD DLRQGFQKGK NIVIKLDWRE SVPHPDKRVE YELWTNSNDE
201: CGARCDEQMD FVKNFKGHAQ ILEKGGYTAF TPHYITWFCP FQFINSPHCK SQCINHGRYC APDPEDNFRE GYEGKDVVLE NLRQLCVHRV ANESSRPWVW
301: WDYVTDFHSR CSMKEKKYSI DCAESVIKSL NLPIEKIKKC IGDPEADTEN QVLRTEQVSQ IGRGNRGDVT ILPTLVINNA QYRGRLERTA VLKAICAGFN
401: ETSEPAICLN TGLETNECLE NNGGCWQDTK ANITACQDTF RGRLCECPVV KGVQYKGDGY TSCTPYGPAR CTMNNGGCWS DTRNGLTFSA CSDSVSTGCK
501: CPEGFQGDGL TCEDINECKE RSVCQCSGCR CKNSWGGYKC SCSGDRLYIN DQDTCIERYG SKTAWWLTFL ILAIVAVAGL AGYIFYKYRF RSYMDSEIMT
601: IMSQYMPLES QRAREVPSEA EPFTL

Arabidopsis Description

VSR7VACUOLAR SORTING RECEPTOR 7 [Source:UniProtKB/TrEMBL;Acc:F4JUS0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.