CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34940.1	EER91265	AT4G26630.1	25387881
AT2G34940.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0611400-01	Rice	plasma membrane	81.86	79.27
TraesCS2A01G425800.2	Wheat	mitochondrion	75.82	72.39
TraesCS2B01G446100.1	Wheat	plasma membrane	75.82	72.27
TraesCS2D01G423700.1	Wheat	golgi	75.16	71.76
GSMUA_AchrUn_...	Banana	plasma membrane	62.91	65.48
PGSC0003DMT400018916	Potato	plasma membrane	61.27	60.0
Solyc02g081970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	62.09	59.56
VIT_01s0011g01050.t01	Wine grape	extracellular, plasma membrane, vacuole	61.11	59.37
KRH12166	Soybean	plasma membrane	60.78	59.24
KRH37180	Soybean	plasma membrane	60.29	59.13
AT4G20110.2	Thale cress	plasma membrane	60.62	59.08
CDY50060	Canola	plasma membrane	60.13	58.51
CDX78975	Canola	plasma membrane	60.29	58.48
Bra013445.1-P	Field mustard	plasma membrane	60.13	58.32
CDY43178	Canola	plasma membrane	58.66	57.07
Bra023151.1-P	Field mustard	plasma membrane	58.5	56.92
CDY02347	Canola	plasma membrane	58.5	56.92
AT1G30900.1	Thale cress	extracellular, plasma membrane, vacuole	58.5	56.74
EER99915	Sorghum	plasma membrane	58.82	56.6
Bra039877.1-P	Field mustard	cytosol	30.39	56.36
EES09132	Sorghum	plasma membrane	57.19	55.82
EER94904	Sorghum	extracellular, plasma membrane, vacuole	56.86	55.33
AT2G34940.1	Thale cress	plasma membrane	54.74	54.21
KXG20551	Sorghum	plasma membrane, plastid	64.71	52.59
CDY64650	Canola	plasma membrane	53.59	52.23
Bra021940.1-P	Field mustard	plasma membrane	53.27	51.99
CDY43647	Canola	plasma membrane	52.94	51.59
CDY12449	Canola	cytosol	23.04	48.62
GSMUA_Achr7P03630_001	Banana	plasma membrane	58.17	35.18
HORVU2Hr1G099640.3	Barley	extracellular	20.1	19.13

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	UniProt:A0A1B6PMW7	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlants:KXG27024	ProteinID:KXG27024	ProteinID:KXG27024.2
InterPro:PA_domain	PFAM:PF02225	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF90	SMART:SM00179
EnsemblPlantsGene:SORBI_3006G211300	SUPFAM:SSF52025	TMHMM:TMhelix	UniParc:UPI000B8B9BD4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:56064577..56068074

Molecular Weight (calculated)

67136.9 Da

IEP (calculated)

6.009

GRAVY (calculated)

-0.261

Length

612 amino acids

Sequence
(BLAST)

001: MAIHVQGHER RLAAVACLVV TMASLASARF IVEKNSIKVL SPRSLRGHHE AAIANYGVPD YGGTLTGVVL YPDAKLATAC KPFGGEKLRS PSGRPVVLLV
101: DRGGCYFALK TWHAQLAGAA AVLVADSADE PLLTMDSPEE ETPDMAFLAN ITVPSALVSK KFGDALRLAA SDGDKEEEVV VRLDWRESMP HPDERVEYEF
201: WTNSNDECGP RCDEQAAFVR AFRGHAQLLE KGGYALFTPH YITWFCPDAF LETPQCKAQC INRGRYCAPD PEGDLRAGYD GKDVVVENLR QLCVHRVANA
301: SGRPWVWWDY VVDYHLRCSM KDNKYSSACA QDVVRSLGLP MDKIDKCMGD PDADAENDVL RTEQIVQVGH GARGDVTILP TLVINNVQYR GKLESTAVLK
401: AICAGFKEST EPHVCLTPGM ETDECLNNNG GCWRDEKTNV TACKDTYRGR ICQCPVVDGV QYQGDGYTDC KAVGLGRCAM DNGGCWKETR QGKTFSACSD
501: PELSGCKCPP GFEGDGFHCQ DVDECRDKLA CSCPHCSCKN MWGGFDCKCN SGMIYIKNED TCIAKEMSAF GWLVTALVLS CVAGIGIAGY LFYKFRLRVG
601: AEQSLPKPRQ KH

Best Arabidopsis Sequence Match ( AT4G20110.1 )
(BLAST)

001: MGLVNGRASL TFLLAALTII AMVVEARFVV EKESISVLNP EEMRSKHDGS IANFGLPDYG GFLIGSVVYP DSKTDGCSAF GKTFKPKFPR PTILLLDRGG
101: CYFALKAWHA QQAGAAAVLV ADNVDEPLLT MDSPEESKDA DGFIEKLTIP SVLIDKSFGD DLRQGFQKGK NIVIKLDWRE SVPHPDKRVE YELWTNSNDE
201: CGARCDEQMD FVKNFKGHAQ ILEKGGYTAF TPHYITWFCP FQFINSPHCK SQCINHGRYC APDPEDNFRE GYEGKDVVLE NLRQLCVHRV ANESSRPWVW
301: WDYVTDFHSR CSMKEKKYSI DCAESVIKSL NLPIEKIKKC IGDPEADTEN QVLRTEQVSQ IGRGNRGDVT ILPTLVINNA QYRGRLERTA VLKAICAGFN
401: ETSEPAICLN TGLETNECLE NNGGCWQDTK ANITACQDTF RGRLCECPVV KGVQYKGDGY TSCTPYGPAR CTMNNGGCWS DTRNGLTFSA CSDSVSTGCK
501: CPEGFQGDGL TCEDINECKE RSVCQCSGCR CKNSWGGYKC SCSGDRLYIN DQDTCIERYG SKTAWWLTFL ILAIVAVAGL AGYIFYKYRF RSYMDSEIMT
601: IMSQYMPLES QRAREVPSEA EPFTL

Arabidopsis Description

VSR7VACUOLAR SORTING RECEPTOR 7 [Source:UniProtKB/TrEMBL;Acc:F4JUS0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.