Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G34940.1 CDX89318 AT4G26630.1 25387881
AT2G34940.1 CDX94304 AT4G26630.1 25387881
AT2G34940.1 CDX97358 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43647 Canola plasma membrane 98.09 98.09
Bra021940.1-P Field mustard plasma membrane 96.82 96.97
AT2G34940.1 Thale cress plasma membrane 80.89 82.2
CDY02347 Canola plasma membrane 72.61 72.5
CDY43178 Canola plasma membrane 72.61 72.5
CDY12449 Canola cytosol 29.46 63.79
CDY62643 Canola mitochondrion 9.39 62.11
CDY50060 Canola plasma membrane 61.78 61.69
CDX78975 Canola plasma membrane 60.99 60.7
TraesCS7A01G281400.1 Wheat cytosol, nucleus, plastid 9.39 59.6
GSMUA_AchrUn_... Banana plasma membrane 54.14 57.82
Os06t0664300-01 Rice plasma membrane 58.44 57.61
GSMUA_Achr3P23680_001 Banana plasma membrane 51.59 57.55
Zm00001d046945_P001 Maize plasma membrane 57.32 57.23
CDY37219 Canola extracellular, golgi, plasma membrane 55.89 56.25
TraesCS7D01G145700.2 Wheat cytosol 26.75 56.0
CDX81459 Canola plasma membrane 55.57 55.93
CDX93144 Canola extracellular, plasma membrane, vacuole 54.3 55.9
TraesCS7D01G471300.1 Wheat golgi 55.89 55.71
TraesCS7A01G483700.1 Wheat golgi, plasma membrane 55.57 55.66
TraesCS7B01G387100.1 Wheat extracellular, plasma membrane 55.57 55.4
CDY42565 Canola cytosol 9.08 55.34
CDX99194 Canola cytosol 9.08 55.34
CDY70452 Canola cytosol 9.08 55.34
CDX91478 Canola plasma membrane 53.98 54.68
CDY13344 Canola plasma membrane 54.3 54.56
CDX78128 Canola plasma membrane 54.3 54.56
CDY65441 Canola plasma membrane 54.78 54.52
CDX67539 Canola plasma membrane 54.14 54.4
CDY60753 Canola plasma membrane 53.66 54.35
CDX73599 Canola plasma membrane 53.98 54.24
Os04t0611400-01 Rice plasma membrane 53.98 53.64
KXG27024 Sorghum plasma membrane 52.23 53.59
TraesCS2B01G446100.1 Wheat plasma membrane 54.62 53.43
TraesCS2A01G425800.2 Wheat mitochondrion 54.46 53.35
HORVU7Hr1G109180.2 Barley mitochondrion, plasma membrane, vacuole 55.57 53.2
TraesCS2D01G423700.1 Wheat golgi 53.98 52.89
CDY04821 Canola mitochondrion, plasma membrane 50.8 50.24
CDY38158 Canola cytosol, plasma membrane 23.73 49.34
KXG20551 Sorghum plasma membrane, plastid 57.48 47.94
CDY10980 Canola cytosol 12.42 43.82
CDY62642 Canola cytosol, plasma membrane, plastid 9.55 42.86
TraesCS6A01G310600.1 Wheat cytosol 25.8 42.74
TraesCS7A01G436000.1 Wheat mitochondrion 13.85 41.23
CDY38157 Canola mitochondrion 24.2 41.08
CDY22565 Canola nucleus 7.01 38.6
GSMUA_Achr7P03630_001 Banana plasma membrane 52.55 32.61
HORVU2Hr1G099640.3 Barley extracellular 16.56 16.17
Protein Annotations
Gene3D:2.10.25.10MapMan:22.5.2.1Gene3D:3.50.30.30GO:A0A078JDX6UniProt:A0A078JDX6EnsemblPlants:CDY64650
ProteinID:CDY64650ProteinID:CDY64650.1InterPro:EGF-like_Ca-bd_domInterPro:EGF_Ca-bd_CSGO:GO:0003674GO:GO:0005488
GO:GO:0005509GO:GO:0005575GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00042491001InterPro:PA_domain
PFAM:PF02225ScanProsite:PS01187PANTHER:PTHR22765PANTHER:PTHR22765:SF56SMART:SM00179SUPFAM:SSF52025
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EEBCDBSEG:seg::
Description
BnaAnng19540DBnaAnng19540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDX6]
Coordinates
chrLK034510:-:19222..22550
Molecular Weight (calculated)
70173.5 Da
IEP (calculated)
5.584
GRAVY (calculated)
-0.304
Length
628 amino acids
Sequence
(BLAST)
001: MSPSNKETVL TLFLALTMVV NVVSTRFFVE KSSVTVLNSW EMKAKHDAAI ANFGIPSHGG FMIGSVVYAG QGAYGCDPLN KTFKPKSPYP TILIIDRGVC
101: NYALKIWNGQ QAGAAAVLLA DNIVEPLIAI DSPEESQHED PDLIKKIKIP SALILSSFGD SLKKALNKGE EIVLKIDWSE TIPNPDERVE YELWANTNDE
201: CGVHCNEQMS FIKNFKGTAQ ILEKGGHALF TPHYISWFCP QELRLSRQCK SQCINQGRYC APDPELDYED GYNGKDVVYE NLRQLCVHKV AKGKNSSWVW
301: WDYVTDFNIR CSMKEKKYSK ECAQTVVESL GLSLEKIKKC IGDTDADVEN EVLKAEQAFQ LGQEKRGVVT IFPTLIINNS QYRGKLERTS VLKAICSGYK
401: EGTEPLICLS TDIETDECLV ANGGCWQDKI SNITACKDTF RGRVCECPVV NGVQYKGDGY TSCKPYGPAR CSMNEGGCWS ETRNGLNFSA CLNSETSGCR
501: CPLGFHGDGL KCEADIDECK EKSACQCDDC KCKNSWGGYE CKCSNNSLYL KEQDTCIERI SRSRSRWFFI IVVMTAIAGI SLSSYIFYKY HIQAYMDSEI
601: VSVMSQYIPL DSRNIHQDSN QIENCNLL
Best Arabidopsis Sequence Match ( AT2G34940.1 )
(BLAST)
001: MSPSNKGTVL ALILALTMVV VNGFSSRFFV EKSSLTVLNS WEMGAKHDAA IANFGLPKYG GFMIGSVVYA GQDAYGCNSF NKTFNTKSPY PKILLIDRGV
101: CNFALKIWNG QQSGAAAVLL ADNIVEPLIT MDTPQDEDPD FIDKVKIPSA LILRSFGDSL KKALKRGEEV ILKMDWSESI PNPDERVEYE LWANTNDECG
201: VHCDKQIDFI KNFKGMAQIL EKGGYTLFRP HYISWVCPKE LLLSKQCRTQ CINQGRYCAL DTKQEFEDGY NGKDVVYENL RQLCVHKVAK EKNTSWVWWD
301: YVTDFNIRCS MKEKKYSREC AETIVESLGL SLEKIKKCIG DPDADVENEV LKAEEAFQLG QENRGIVTIF PTLMINNAQY RGKLERTAVL KAICSGFKER
401: TEPSICLNSD IETNECLIEN GGCWQDKRSN VTACKDTFRG RVCECPVVDG VQYKGDGYTS CKPYGPARCS MNNGDCWSET RKGLTFSSCS DSETSGCRCP
501: LGFLGDGLKC EDIDECKEKS ACKCDGCKCK NNWGGYECKC SNNSIYMKEE DTCIERRSGS RSRGLFTIVV LTAIAGISLG AYIFYKYHLQ SYMDSEIVSI
601: MSQYIPLDSQ SINQDSFK
Arabidopsis Description
VSR5VSR5 [Source:UniProtKB/TrEMBL;Acc:A0A178VYD0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.