Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02347 | Canola | plasma membrane | 93.98 | 94.28 |
| Bra023151.1-P | Field mustard | plasma membrane | 93.82 | 94.12 |
| CDY43178 | Canola | plasma membrane | 93.66 | 93.96 |
| Bra039877.1-P | Field mustard | cytosol | 44.22 | 84.55 |
| CDY12449 | Canola | cytosol | 36.45 | 79.31 |
| AT2G34940.1 | Thale cress | plasma membrane | 73.06 | 74.6 |
| AT4G20110.2 | Thale cress | plasma membrane | 68.62 | 68.95 |
| GSMUA_Achr3P23680_001 | Banana | plasma membrane | 58.16 | 65.19 |
| Os06t0664300-01 | Rice | plasma membrane | 64.98 | 64.36 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 59.9 | 64.29 |
| Zm00001d046945_P001 | Maize | plasma membrane | 62.76 | 62.96 |
| TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 62.12 | 62.22 |
| TraesCS7D01G471300.1 | Wheat | golgi | 61.97 | 62.06 |
| TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 61.33 | 61.72 |
| TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 9.67 | 61.62 |
| AT2G14740.1 | Thale cress | extracellular, plasma membrane, vacuole | 59.75 | 60.03 |
| AT2G14720.1 | Thale cress | extracellular, plasma membrane, vacuole | 59.59 | 59.87 |
| TraesCS7D01G145700.2 | Wheat | cytosol | 28.37 | 59.67 |
| HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 61.97 | 59.6 |
| Os04t0611400-01 | Rice | plasma membrane | 59.43 | 59.34 |
| TraesCS2B01G446100.1 | Wheat | plasma membrane | 59.59 | 58.57 |
| KXG27024 | Sorghum | plasma membrane | 56.74 | 58.5 |
| TraesCS2A01G425800.2 | Wheat | mitochondrion | 58.95 | 58.03 |
| AT3G52850.1 | Thale cress | extracellular, golgi, plasma membrane | 57.05 | 57.78 |
| TraesCS2D01G423700.1 | Wheat | golgi | 58.48 | 57.57 |
| AT2G30290.2 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 54.36 | 53.51 |
| KXG20551 | Sorghum | plasma membrane, plastid | 63.07 | 52.86 |
| TraesCS6A01G310600.1 | Wheat | cytosol | 27.1 | 45.12 |
| TraesCS7A01G436000.1 | Wheat | mitochondrion | 14.26 | 42.65 |
| GSMUA_Achr7P03630_001 | Banana | plasma membrane | 57.53 | 35.87 |
| HORVU2Hr1G099640.3 | Barley | extracellular | 17.27 | 16.95 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | EntrezGene:839974 | ProteinID:AAF98196.1 | ProteinID:AEE31291.1 |
| ArrayExpress:AT1G30900 | EnsemblPlantsGene:AT1G30900 | RefSeq:AT1G30900 | TAIR:AT1G30900 | RefSeq:AT1G30900-TAIR-G | EnsemblPlants:AT1G30900.1 |
| TAIR:AT1G30900.1 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0030665 | GO:GO:0031410 | GO:GO:0031902 | RefSeq:NP_174375.1 | InterPro:PA_domain | PFAM:PF02225 |
| PO:PO:0000013 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | ScanProsite:PS01187 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | UniProt:Q9FYH7 | SMART:SM00179 |
| SUPFAM:SSF52025 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000004830B | Symbol:VSR6 | : |
Description
VSR6Vacuolar-sorting receptor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYH7]
Coordinates
chr1:+:10996870..11000809
Molecular Weight (calculated)
70261.4 Da
IEP (calculated)
5.186
GRAVY (calculated)
-0.373
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.