Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G14740.1 | Thale cress | extracellular, plasma membrane, vacuole | 96.5 | 96.5 |
| Bra013121.1-P | Field mustard | extracellular, plasma membrane, vacuole | 94.9 | 94.45 |
| CDY37219 | Canola | extracellular, golgi, plasma membrane | 93.79 | 94.39 |
| CDY65441 | Canola | plasma membrane | 94.75 | 94.29 |
| CDX93144 | Canola | extracellular, plasma membrane, vacuole | 91.24 | 93.93 |
| Bra039817.1-P | Field mustard | extracellular, golgi, plasma membrane | 93.31 | 93.91 |
| CDX81459 | Canola | plasma membrane | 93.31 | 93.91 |
| KRH27575 | Soybean | endoplasmic reticulum | 81.21 | 81.21 |
| KRG91109 | Soybean | endoplasmic reticulum | 81.37 | 80.98 |
| VIT_03s0091g00740.t01 | Wine grape | plasma membrane | 81.05 | 80.67 |
| KRH35666 | Soybean | endoplasmic reticulum | 80.89 | 80.51 |
| KRH77935 | Soybean | endoplasmic reticulum | 81.69 | 79.78 |
| PGSC0003DMT400066159 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 79.94 | 79.68 |
| Solyc01g107130.2.1 | Tomato | nucleus | 79.78 | 79.52 |
| Zm00001d012390_P001 | Maize | cytosol | 11.15 | 77.78 |
| GSMUA_Achr6P16900_001 | Banana | cytosol, nucleus, plasma membrane | 67.68 | 74.82 |
| Zm00001d004678_P001 | Maize | cytosol, nucleus, plastid | 11.94 | 74.26 |
| Os10t0346600-00 | Rice | plasma membrane | 74.04 | 73.69 |
| GSMUA_Achr10P... | Banana | cytosol | 66.08 | 73.06 |
| Zm00001d014302_P003 | Maize | plasma membrane | 71.34 | 72.49 |
| TraesCS1D01G131100.1 | Wheat | golgi | 72.29 | 71.72 |
| AT3G52850.1 | Thale cress | extracellular, golgi, plasma membrane | 70.86 | 71.43 |
| TraesCS1B01G148200.1 | Wheat | plasma membrane | 71.82 | 71.36 |
| TraesCS1A01G134600.2 | Wheat | extracellular, plasma membrane, vacuole | 72.29 | 71.16 |
| Zm00001d014303_P002 | Maize | plasma membrane | 67.68 | 68.66 |
| HORVU1Hr1G032780.9 | Barley | extracellular | 68.15 | 67.3 |
| AT2G30290.2 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 66.88 | 65.52 |
| AT4G20110.2 | Thale cress | plasma membrane | 59.87 | 59.87 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 59.87 | 59.59 |
| AT2G34940.1 | Thale cress | plasma membrane | 55.89 | 56.8 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | EntrezGene:815960 | UniProt:A0A178VV05 | ProteinID:AAC24185.1 |
| ProteinID:AAM15052.1 | ProteinID:AEC06326.1 | ProteinID:AEC06327.1 | EMBL:AK220910 | ArrayExpress:AT2G14720 | EnsemblPlantsGene:AT2G14720 |
| RefSeq:AT2G14720 | TAIR:AT2G14720 | RefSeq:AT2G14720-TAIR-G | EnsemblPlants:AT2G14720.1 | TAIR:AT2G14720.1 | EMBL:AY062744 |
| Unigene:At.22740 | EMBL:BT008390 | InterPro:EGF-like_CS | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0000139 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005773 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006623 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030665 |
| GO:GO:0031410 | GO:GO:0031902 | RefSeq:NP_179079.1 | RefSeq:NP_849954.1 | ProteinID:OAP10219.1 | InterPro:PA_domain |
| PFAM:PF02225 | PFAM:PF12662 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0005052 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0020030 | PO:PO:0020100 | ScanProsite:PS01186 |
| ScanProsite:PS01187 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF54 | UniProt:Q56ZQ3 | SMART:SM00179 | SUPFAM:SSF52025 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000004850B | Symbol:VSR4 | InterPro:cEGF | SEG:seg |
Description
VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
Coordinates
chr2:-:6300488..6304445
Molecular Weight (calculated)
69815.8 Da
IEP (calculated)
5.113
GRAVY (calculated)
-0.401
Length
628 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.