Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d016446_P001 | |
| Zm00001d046900_P003 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G14720.1 | Zm00001d016446_P001 | AT4G16190.1 | 23738689 |
| AT2G14720.1 | Zm00001d046900_P003 | AT5G20500.1 | 23738689 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004678_P001 | Maize | cytosol, nucleus, plastid | 96.67 | 86.14 |
| Zm00001d014302_P003 | Maize | plasma membrane | 96.67 | 14.08 |
| Zm00001d014303_P002 | Maize | plasma membrane | 96.67 | 14.05 |
| GSMUA_Achr10P... | Banana | cytosol | 85.56 | 13.56 |
| GSMUA_Achr6P16900_001 | Banana | cytosol, nucleus, plasma membrane | 82.22 | 13.03 |
| PGSC0003DMT400066159 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 83.33 | 11.9 |
| VIT_03s0091g00740.t01 | Wine grape | plasma membrane | 83.33 | 11.89 |
| KRH27575 | Soybean | endoplasmic reticulum | 82.22 | 11.78 |
| Solyc01g107130.2.1 | Tomato | nucleus | 82.22 | 11.75 |
| KRG91109 | Soybean | endoplasmic reticulum | 82.22 | 11.73 |
| KRH35666 | Soybean | endoplasmic reticulum | 82.22 | 11.73 |
| CDX93144 | Canola | extracellular, plasma membrane, vacuole | 78.89 | 11.64 |
| CDX81459 | Canola | plasma membrane | 80.0 | 11.54 |
| CDY37219 | Canola | extracellular, golgi, plasma membrane | 80.0 | 11.54 |
| KRH77935 | Soybean | endoplasmic reticulum | 82.22 | 11.51 |
| Bra039817.1-P | Field mustard | extracellular, golgi, plasma membrane | 78.89 | 11.38 |
| AT2G14740.1 | Thale cress | extracellular, plasma membrane, vacuole | 78.89 | 11.31 |
| CDY65441 | Canola | plasma membrane | 78.89 | 11.25 |
| Bra013121.1-P | Field mustard | extracellular, plasma membrane, vacuole | 78.89 | 11.25 |
| AT2G14720.1 | Thale cress | extracellular, plasma membrane, vacuole | 77.78 | 11.15 |
| Zm00001d005062_P003 | Maize | plasma membrane | 76.67 | 11.06 |
| Zm00001d052354_P005 | Maize | plasma membrane | 75.56 | 10.91 |
| Zm00001d022439_P001 | Maize | extracellular, plasma membrane, vacuole | 75.56 | 10.74 |
| Zm00001d046945_P001 | Maize | plasma membrane | 72.22 | 10.33 |
| Zm00001d029056_P002 | Maize | extracellular, plasma membrane, vacuole | 70.0 | 10.06 |
| Zm00001d047522_P002 | Maize | extracellular, plasma membrane, vacuole | 70.0 | 9.63 |
| Zm00001d053767_P001 | Maize | mitochondrion | 5.56 | 3.57 |
| Zm00001d005060_P001 | Maize | extracellular | 1.11 | 0.92 |
Protein Annotations
| EnsemblPlants:Zm00001d012390_P001 | EnsemblPlants:Zm00001d012390_T001 | EnsemblPlantsGene:Zm00001d012390 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF54 | ProteinID:AQK99420.1 |
| UniParc:UPI0008433E81 | UniProt:A0A1D6G8E4 | MapMan:35.1 | : | : | : |
Description
Vacuolar-sorting receptor 4
Coordinates
chr8:-:173404141..173405051
Molecular Weight (calculated)
9980.7 Da
IEP (calculated)
4.616
GRAVY (calculated)
-0.749
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MGDPNADSDH PLLKMEQDAQ IGKGSRRDVT ILPTLVVNNR QYRGKLERKA VLKAICAGFE ETTEPNVCLS GDIETNECLN DNGGYWQDKS
001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
Arabidopsis Description
VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.