Factsheet for Bra034166.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000163.1-P
Bra006952.1-P
Bra017039.1-P
Bra028535.1-P
Bra031138.1-P
Bra033472.1-P
Bra036500.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11130.1	Bra031138.1-P	AT2G20760.1	24529374
AT3G11130.1	Bra036500.1-P	AT2G20760.1	24529374
AT3G11130.1	Bra000163.1-P	AT2G40060.1	24529374
AT3G11130.1	Bra017039.1-P	AT2G40060.1	24529374
AT3G11130.1	Bra033472.1-P	AT3G51890.1	24529374
AT3G11130.1	Bra006952.1-P	AT3G52850.1	16905657
AT3G11130.1	Bra028535.1-P	AT3G52850.1	16905657

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034864.1-P	Field mustard	cytosol	98.48	95.83
Bra001391.1-P	Field mustard	cytosol	95.86	95.59
Bra001286.1-P	Field mustard	cytosol	95.44	93.13
Os12t0104766-00	Rice	plasma membrane	35.01	87.72
Os11t0104900-00	Rice	plasma membrane	42.2	87.41
Os11t0104866-00	Rice	plasma membrane	34.74	87.02
Bra029698.1-P	Field mustard	cytosol	86.95	85.13
CDY36301	Canola	cytosol	97.31	83.87
AT3G11130.1	Thale cress	cytosol, plasma membrane	97.65	82.93
Solyc05g052510.2.1	Tomato	nucleus, plastid	92.27	78.31
Solyc06g051310.2.1	Tomato	nucleus	91.57	77.95
KRH31163	Soybean	endoplasmic reticulum	91.23	77.71
KRG97711	Soybean	endoplasmic reticulum, nucleus	91.16	77.65
KRH73205	Soybean	nucleus	91.44	77.56
KRH14933	Soybean	nucleus	90.81	77.35
Solyc03g096000.2.1	Tomato	nucleus	90.19	76.73
KXG22761	Sorghum	plastid	89.78	76.02
EES07849	Sorghum	plastid	89.64	75.95
TraesCS5D01G158800.1	Wheat	plastid	89.09	75.53
TraesCS5A01G153500.1	Wheat	golgi, unclear	89.02	75.47
TraesCS5B01G152300.1	Wheat	unclear	89.02	75.47
TraesCS4A01G182300.1	Wheat	extracellular, golgi	89.16	75.28
TraesCS4D01G130900.1	Wheat	golgi, unclear	88.95	75.1
TraesCS4B01G136100.2	Wheat	golgi, unclear	89.16	74.54
HORVU4Hr1G024710.4	Barley	plastid	89.02	72.38
HORVU5Hr1G048010.1	Barley	plastid	88.74	71.27
Os12t0104800-01	Rice	cytosol	5.94	70.49
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	2.42	66.04
VIT_16s0115g00130.t01	Wine grape	cytosol	4.83	60.34
Zm00001d021067_P001	Maize	cytosol, mitochondrion	15.47	50.56
VIT_19s0027g01340.t01	Wine grape	cytosol	10.01	47.23

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra034166
EnsemblPlants:Bra034166.1	EnsemblPlants:Bra034166.1-P	InterPro:Clathrin_H-chain/VPS_repeat	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt
InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032051	GO:GO:0048268	GO:GO:0071439	InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025
UniProt:M4EZC3	PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838	PIRSF:PIRSF002290
PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371	SUPFAM:SSF50989
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002543DBC	SEG:seg	:	:	:

Description

AT3G11130 (E=0.0) | clathrin heavy chain, putative

Coordinates

chrA01:+:27111436..27119659

Molecular Weight (calculated)

163486.0 Da

IEP (calculated)

4.951

GRAVY (calculated)

-0.137

Length

1448 amino acids

Sequence
(BLAST)

0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQLI NYKCSPDEKW LVLIGIAPGS PERPQLVKGN MQLFSVNQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFSKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLSS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KVGYTPDYMF LLQTILRTDP
0501: QGAVNFALMM SQMEGGCPVD YNTITDLFLQ RNLIREATAF LLDVLKPNLP EHAFLQTKVL EINLVTFPNV ADAILANGMF SHYDRPRVAQ LCEKAGPYIQ
0601: SLKEVERVTR ESNFYDAEKT KNFLMEAKLP DARPLINVCD RFGFVPDLTH YLYTNNMLRY IEGYVQKVNP GNAPLVVGQL LDDECPEDFI KGLILSVRSL
0701: LPVEPLVEEC EKRNRLRLLT QFLEHLVSEG SQDTHVHNAL EQVSAAVKAF MTADLPHELI ELLEKIVLQN SAFSGNFNLQ NLLILTAIKA DPSRVMDYIN
0801: RLDNFDGPAV GEVAVDAQLY EEAFAIFKKF NLNVQAVNVL LDNVRSIERA VEFAFRVEED SVWSQVAKAQ LRDGLVSDAI ESFIRAEDAT HFLEVIRATE
0901: DANVYDDLVR YLLMVRQKVK EPKVDSELIY AYAKIDRLGE IEEFILMPNV ANLQTVGDRL YDEALYEAAK IIYAFISNWA KLAVTLVKLQ QFQGAVDAAR
1001: KANSAKTWKE VCFACVDAEE FRLAQICGLN VIIQVDDLEE VSEFYQNRGC FSELISLMES GLGLERAHMG IFTELGVLYA RYRYEKLMEH IKLFSTRLNI
1101: PKLIRACDEQ QHWQELTYLY IQYDEFDNAA TTVMNHSPEA WEHMQFKDIV AKVANVELYY KAVHFYLQEH PDIINDLLNV LALRLDHTRV VDIMRKAGQL
1201: RLIKPYMVAV QSNNVSAVNE ALNEIYVEEE DYDRLRESID LHDSFDQIGL AQKIEKHELV EMRRVAAYIY KKAGRWKQSI ALSKKDNMYK DCMETASQSG
1301: DHDLAEQLLV YFIEQGKKEC FATCLFVCYD LIRPDVALEL AWINNMIDFA FPYLLQFIRE YSGKVDELIK DKLEAQKEVK AKEQEEKDVM SQQNMYAQLL
1401: PLALPAPPMP GMGGGPGMGG GYGPPPPMGG MPGMPPMPPY GMPPMGGY

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.