Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034166.1-P | Field mustard | cytosol | 93.13 | 95.44 |
| Bra001391.1-P | Field mustard | cytosol | 92.05 | 94.08 |
| Bra034864.1-P | Field mustard | cytosol | 92.79 | 92.54 |
| CDX74011 | Canola | cytosol | 98.32 | 86.95 |
| Os11t0104900-00 | Rice | plasma membrane | 40.77 | 86.55 |
| Os12t0104766-00 | Rice | plasma membrane | 33.56 | 86.16 |
| Os11t0104866-00 | Rice | plasma membrane | 33.42 | 85.81 |
| Bra029698.1-P | Field mustard | cytosol | 83.29 | 83.57 |
| Solyc05g052510.2.1 | Tomato | nucleus, plastid | 90.16 | 78.43 |
| Solyc06g051310.2.1 | Tomato | nucleus | 89.82 | 78.37 |
| KRG97711 | Soybean | endoplasmic reticulum, nucleus | 89.62 | 78.24 |
| KRH31163 | Soybean | endoplasmic reticulum | 89.49 | 78.12 |
| KRH14933 | Soybean | nucleus | 89.35 | 78.0 |
| KRH73205 | Soybean | nucleus | 89.56 | 77.86 |
| Solyc03g096000.2.1 | Tomato | nucleus | 88.75 | 77.38 |
| KXG22761 | Sorghum | plastid | 87.87 | 76.26 |
| EES07849 | Sorghum | plastid | 87.8 | 76.24 |
| TraesCS5D01G158800.1 | Wheat | plastid | 87.33 | 75.88 |
| TraesCS5B01G152300.1 | Wheat | unclear | 87.26 | 75.82 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 87.26 | 75.82 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 87.6 | 75.8 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 87.47 | 75.69 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 87.4 | 74.88 |
| HORVU4Hr1G024710.4 | Barley | plastid | 87.2 | 72.66 |
| HORVU5Hr1G048010.1 | Barley | plastid | 86.99 | 71.6 |
| Os12t0104800-01 | Rice | cytosol | 5.53 | 67.21 |
| VIT_03s0017g00210.t01 | Wine grape | cytosol, extracellular | 2.36 | 66.04 |
| VIT_16s0115g00130.t01 | Wine grape | cytosol | 4.78 | 61.21 |
| Zm00001d021067_P001 | Maize | cytosol, mitochondrion | 15.23 | 51.02 |
| VIT_19s0027g01340.t01 | Wine grape | cytosol | 9.64 | 46.58 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | Gene3D:2.130.10.110 | MapMan:22.1.1.1 | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra001286 |
| EnsemblPlants:Bra001286.1 | EnsemblPlants:Bra001286.1-P | InterPro:Clathrin_H-chain/VPS_repeat | InterPro:Clathrin_H-chain_N | InterPro:Clathrin_H-chain_linker_core | InterPro:Clathrin_H-chain_propeller_rpt |
| InterPro:Clathrin_heavy_chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 |
| GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 | InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR016025 |
| UniProt:M4CAQ7 | PFAM:PF00637 | PFAM:PF01394 | PFAM:PF09268 | PFAM:PF13838 | PIRSF:PIRSF002290 |
| PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 | SMART:SM00299 | SUPFAM:SSF48371 | SUPFAM:SSF50989 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002540544 | SEG:seg | : | : | : |
Description
AT3G08530 (E=0.0) | clathrin heavy chain, putative
Coordinates
chrA03:-:15682913..15690998
Molecular Weight (calculated)
167587.0 Da
IEP (calculated)
4.997
GRAVY (calculated)
-0.117
Length
1484 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAANAPITM KEVLTLPSVG INQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMSMPMQ PLRRPITADS ALMNPDSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TLKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGP PERAQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFSLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INMRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAEELVVER FKELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTKGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERKE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDF NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLFIQS LKEVERVTRE SNFYDAEKTK NFLMEAKLPD ARPLINVCDR FGFVPDLTHY LYTNNMLRYI
0701: EGYVQKVNPG NAPLVVGQLL DDECPEDFIK GLILSVRSLL PVEPLVEECE KRNRLRLLTQ FLEHLVSEGS QDVHVHNALE QVSAAVKAFM TADLPHELIE
0801: LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVDVLL DNVKSIERSV EFAFRVEEDS
0901: VWSQVAKAQL REGLVSDAIE SFIRAEDATH FLEVIRATED ANVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI EEFILMPNVA NLPNVGDRLY
1001: DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNV IIQVDDLEEV SEFYQNRGCF SELISLMESG
1101: LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW EHMQFKDIVA KVANVELYYK
1201: AVHFYLQEHP DLINDLLNVL ALRLDHTRVV DIMRKAGQLR LIKPYMVAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL HDSFDQIGLA QKIEKHELVE
1301: MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA WIHNMLDFAF PYLLQFIREY
1401: SGKVDELIKD KLEAQKEVKA KEQEDKDVMS QQNMYAHLLP LALPAPPMPG MGGGGGYGPP PPMGGGMPGM PPMPPYGMPP MGGY
0101: AKAKLKSHQM PEQVAFWKWI TLKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGP PERAQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFSLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INMRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAEELVVER FKELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTKGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERKE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDF NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLFIQS LKEVERVTRE SNFYDAEKTK NFLMEAKLPD ARPLINVCDR FGFVPDLTHY LYTNNMLRYI
0701: EGYVQKVNPG NAPLVVGQLL DDECPEDFIK GLILSVRSLL PVEPLVEECE KRNRLRLLTQ FLEHLVSEGS QDVHVHNALE QVSAAVKAFM TADLPHELIE
0801: LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVDVLL DNVKSIERSV EFAFRVEEDS
0901: VWSQVAKAQL REGLVSDAIE SFIRAEDATH FLEVIRATED ANVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI EEFILMPNVA NLPNVGDRLY
1001: DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNV IIQVDDLEEV SEFYQNRGCF SELISLMESG
1101: LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW EHMQFKDIVA KVANVELYYK
1201: AVHFYLQEHP DLINDLLNVL ALRLDHTRVV DIMRKAGQLR LIKPYMVAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL HDSFDQIGLA QKIEKHELVE
1301: MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA WIHNMLDFAF PYLLQFIREY
1401: SGKVDELIKD KLEAQKEVKA KEQEDKDVMS QQNMYAHLLP LALPAPPMPG MGGGGGYGPP PPMGGGMPGM PPMPPYGMPP MGGY
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.