Factsheet for VIT_19s0027g01340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0337g00070.t01
VIT_03s0017g00210.t01
VIT_03s0038g03250.t01
VIT_05s0020g00360.t01
VIT_05s0020g03180.t01
VIT_07s0151g01000.t01
VIT_07s0151g01010.t01
VIT_08s0007g02140.t01
VIT_08s0007g07790.t01
VIT_08s0058g00250.t01
VIT_08s0058g01360.t01
VIT_09s0002g07500.t01
VIT_10s0003g04650.t01
VIT_13s0019g04680.t01
VIT_13s0067g00550.t01
VIT_13s0067g03220.t01
VIT_13s0156g00270.t01
VIT_14s0030g01760.t01
VIT_14s0060g02070.t01
VIT_14s0171g00280.t01
VIT_16s0115g00130.t01
VIT_17s0000g01560.t01
VIT_19s0014g00220.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08530.1	VIT_07s0151g01010.t01	AT1G03140.1	21798944
AT3G08530.1	VIT_09s0002g07500.t01	AT1G52510.1	21798944
AT3G08530.1	VIT_19s0014g00220.t01	AT1G53510.1	21798944
AT3G08530.1	VIT_13s0156g00270.t01	AT2G32840.1	21798944
AT3G08530.1	VIT_10s0003g04650.t01	AT2G34720.1	21798944
AT3G08530.1	VIT_08s0058g00250.t01	AT2G38300.1	21798944
AT3G08530.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT3G08530.1	VIT_14s0171g00280.t01	AT3G01780.1	21187379
AT3G08530.1	VIT_14s0030g01760.t01	AT3G04860.1	21798944
AT3G08530.1	VIT_14s0060g02070.t01	AT3G05640.1	21798944
AT3G08530.1	VIT_00s0337g00070.t01	AT3G07440.1	21798944
AT3G08530.1	VIT_03s0017g00210.t01	AT3G08530.1	21187379
AT3G08530.1	VIT_16s0115g00130.t01	AT3G08530.1	21187379
AT3G08530.1	VIT_19s0027g01340.t01	AT3G08530.1	21187379
AT3G08530.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT3G08530.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT3G08530.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT3G08530.1	VIT_13s0019g04680.t01	AT3G54840.1	21798944
AT3G08530.1	VIT_05s0020g03180.t01	AT4G02770.1	21798944
AT3G08530.1	VIT_07s0151g01000.t01	AT4G02770.1	21798944
AT3G08530.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT3G08530.1	VIT_03s0038g03250.t01	AT4G35250.1	21798944
AT3G08530.1	VIT_13s0067g03220.t01	AT5G05190.1	21798944
AT3G08530.1	VIT_05s0020g00360.t01	AT5G30490.1	21798944
AT3G11130.1	VIT_13s0067g00550.t01	AT2G40060.1	24529374
AT3G11130.1	VIT_03s0017g00210.t01	AT3G08530.1	24529374
AT3G11130.1	VIT_16s0115g00130.t01	AT3G08530.1	24529374
AT3G11130.1	VIT_19s0027g01340.t01	AT3G08530.1	24529374
AT3G11130.1	VIT_08s0007g02140.t01	AT3G51890.1	24529374
AT3G11130.1	VIT_08s0058g01360.t01	AT3G52850.1	16905657

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0115g00130.t01	Wine grape	cytosol	27.36	72.41
Os12t0104766-00	Rice	plasma membrane	45.93	24.39
Os11t0104866-00	Rice	plasma membrane	45.93	24.39
Bra034166.1-P	Field mustard	cytosol	47.23	10.01
Bra001391.1-P	Field mustard	cytosol	47.23	9.99
Bra034864.1-P	Field mustard	cytosol	47.23	9.74
Bra001286.1-P	Field mustard	cytosol	46.58	9.64
VIT_13s0067g01290.t01	Wine grape	extracellular	53.09	9.57
Bra029698.1-P	Field mustard	cytosol	43.32	8.99
KRG97711	Soybean	endoplasmic reticulum, nucleus	49.19	8.88
KRH31163	Soybean	endoplasmic reticulum	48.86	8.82
TraesCS4D01G130900.1	Wheat	golgi, unclear	49.19	8.8
TraesCS4A01G182300.1	Wheat	extracellular, golgi	49.19	8.8
TraesCS4B01G136100.2	Wheat	golgi, unclear	49.19	8.72
Solyc05g052510.2.1	Tomato	nucleus, plastid	48.21	8.68
EES07849	Sorghum	plastid	48.21	8.66
KXG22761	Sorghum	plastid	48.21	8.65
Solyc06g051310.2.1	Tomato	nucleus	47.88	8.64
KRH73205	Soybean	nucleus	47.88	8.61
TraesCS5B01G152300.1	Wheat	unclear	47.88	8.61
VIT_06s0004g06860.t01	Wine grape	cytosol, plastid	47.56	8.56
AT3G11130.1	Thale cress	cytosol, plasma membrane	47.56	8.56
TraesCS5A01G153500.1	Wheat	golgi, unclear	47.56	8.55
TraesCS5D01G158800.1	Wheat	plastid	47.56	8.55
HORVU4Hr1G024710.4	Barley	plastid	49.51	8.53
KRH14933	Soybean	nucleus	47.23	8.53
Solyc03g096000.2.1	Tomato	nucleus	47.23	8.52
AT3G08530.1	Thale cress	cytosol, plasma membrane, plastid	47.23	8.51
HORVU5Hr1G048010.1	Barley	plastid	47.56	8.1
Os11t0104900-00	Rice	plasma membrane	2.93	1.29
Zm00001d021067_P001	Maize	cytosol, mitochondrion	1.3	0.9
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	0.0	0.0
Os12t0104800-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:16.4.7.3.1	Gene3D:2.130.10.110	ProteinID:CCB47205	ProteinID:CCB47205.1	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_propeller_rpt
ncoils:Coil	UniProt:F6H4R6	EMBL:FN595234	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0006139	GO:GO:0006259
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015074
GO:GO:0016020	GO:GO:0016192	GO:GO:0016787	GO:GO:0016887	GO:GO:0030130	GO:GO:0030132
InterPro:IPR016025	PFAM:PF01394	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SUPFAM:SSF50989	UniParc:UPI000210A685
ArrayExpress:VIT_19s0027g01340	EnsemblPlantsGene:VIT_19s0027g01340	EnsemblPlants:VIT_19s0027g01340.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:21349044..21351449

Molecular Weight (calculated)

33918.7 Da

IEP (calculated)

5.903

GRAVY (calculated)

0.056

Length

307 amino acids

Sequence
(BLAST)

001: MFLVRTSAQL LAHVTGSSTH GAVVKYGFEH EPHVQSGLIY MYAGLGGLVA CHWMSSSICE PDLVCQTAMV SACAKIINYR YDPSEKWLVL IGIAPGSPER
101: PQLVKGNMQL FSVEQHRSQA LETQAVSFAT FKVPGNDQSY ALIGFATISF NAGQIVSKLH VIELGSNSGE PGFIGKQADL FFPPDFTDDF LAAMQISHKY
201: DFIHVITKLG LLFVYDLETS STVYRNRISP DITALEESLT AAGGKFIFVQ KLRDFVSVTC DVLQHKAFLF IEGLEEQMQK LHEERASAVL ERRAADNDEM
301: MGNTSIH

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.