Factsheet for VIT_09s0002g07500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0233g00120.t01
VIT_00s0233g00130.t01
VIT_00s0233g00170.t01
VIT_00s0233g00180.t01
VIT_02s0154g00160.t01
VIT_02s0154g00170.t01
VIT_02s0154g00180.t01
VIT_02s0154g00190.t01
VIT_18s0075g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52510.1	VIT_00s0233g00120.t01	AT1G62560.1	21798944
AT1G52510.1	VIT_00s0233g00130.t01	AT1G62560.1	21798944
AT1G52510.1	VIT_00s0233g00170.t01	AT1G62560.1	21798944
AT1G52510.1	VIT_00s0233g00180.t01	AT1G62560.1	21798944
AT1G52510.1	VIT_02s0154g00160.t01	AT1G62560.1	21798944
AT1G52510.1	VIT_02s0154g00170.t01	AT1G62560.1	21798944
AT1G52510.1	VIT_02s0154g00180.t01	AT1G62560.1	21798944
AT1G52510.1	VIT_02s0154g00190.t01	AT1G62560.1	21798944
AT1G52510.1	VIT_18s0075g00690.t01	AT1G62560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44482	Soybean	nucleus	74.67	76.06
PGSC0003DMT400073443	Potato	plastid	75.46	75.46
Solyc06g068220.2.1	Tomato	plastid	75.2	75.2
KRH47425	Soybean	plastid	73.37	75.13
HORVU2Hr1G114720.10	Barley	cytosol	62.14	72.12
AT1G52510.1	Thale cress	plastid	71.28	71.84
KRH55620	Soybean	cytosol	21.67	70.94
Bra030380.1-P	Field mustard	plastid	68.67	69.95
CDY49911	Canola	plastid	68.67	69.95
CDX87912	Canola	plastid	67.1	68.35
Os04t0644600-01	Rice	plastid	64.75	63.27
TraesCS2A01G517900.3	Wheat	plastid	64.75	62.94
TraesCS2D01G519500.2	Wheat	plastid	65.54	62.91
KXG27241	Sorghum	plastid	65.54	62.28
TraesCS2B01G546500.2	Wheat	plastid	63.45	60.6
Zm00001d026437_P001	Maize	plastid	44.39	58.22
VIT_07s0151g00860.t01	Wine grape	plastid	26.89	25.62

Protein Annotations

EntrezGene:100250971	wikigene:100250971	Gene3D:3.40.50.1820	MapMan:35.2	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1
ProteinID:CBI36362	ProteinID:CBI36362.3	UniProt:D7U166	InterPro:Epox_hydrolase-like	EMBL:FN596494	GO:GO:0003674
GO:GO:0003824	InterPro:IPR029058	EntrezGene:LOC100250971	wikigene:LOC100250971	PFAM:PF12697	PRINTS:PR00111
PRINTS:PR00412	PANTHER:PTHR43194	SUPFAM:SSF53474	TIGR:TC64163	UniParc:UPI00015CCD77	ArrayExpress:VIT_09s0002g07500
EnsemblPlantsGene:VIT_09s0002g07500	EnsemblPlants:VIT_09s0002g07500.t01	unigene:Vvi.9782	RefSeq:XP_002263706	RefSeq:XP_002263706.1	SEG:seg

Description

No Description!

Coordinates

chr9:+:7531420..7545784

Molecular Weight (calculated)

42226.0 Da

IEP (calculated)

6.537

GRAVY (calculated)

-0.207

Length

383 amino acids

Sequence
(BLAST)

001: MASSFPSPLL NLQLSSSSLS NSTAVGAITT GVCWRSGGRR SRGRTVIANA TEKEEQGKDS PAFNPFGFVT DNPSSRSAIQ LPESPAEDGN VGQMLYRIED
101: KGKEYGSYIR SGEFVWFVRE TGSPDSRRGT IIFLHGAPTQ SYSYRVVMSQ MSDVGFHCFA PDWIGFGFSE KPYSGYGFDY TEKEFHDEFD KLLDVLEVKS
201: PFLLVVQGFL VGSFGLTWAL KNPSRISKLA ILNSPLTASS PVPGLFQKLR IPLYGEFTCQ NAVMAERFIE AGSAYVLKLE KADVYRLPYL SSSGPGFALL
301: EAARKANFKD IASQVAAGFA SGRWDKPILV AWGISDKYLP QSVAEEFQKG NPDYIKLKLI EGAGHMPQED WPEKVVDALR AFF

Best Arabidopsis Sequence Match ( AT1G52510.1 )
(BLAST)

001: MSLLSPLPLL HSFSSTVATK STASRITATP SKIRFSVINA TSENGNSGGS KNDRDEDPSF NPFGFVTDNP SSRSAIQLPE SPAEDGNVGQ MLYRTEDKGK
101: EYGSTIKSGK LRWFVRETGS KESRRGTIVF VHGAPTQSFS YRTVMSELSD AGFHCFAPDW IGFGFSDKPQ PGYGFNYTEK EYHEAFDKLL EVLEVKSPFF
201: LVVQGFLVGS YGLTWALKNP SKVEKLAILN SPLTVSSPVP GLFKQLRIPL FGEFTCQNAI LAERFIEGGS PYVLKNEKAD VYRLPYLSSG GPGFALLETA
301: KKINFGDTLS QIANGFSSGS WDKPTLLAWG IADKYLPQSI AEEFEKQNPQ NVKLRLIEGA GHLPQEDWPE KVVAALRAFF

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.