CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY12955
CDY31813

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52510.1	CDY12955	AT1G62560.1	21798944
AT1G52510.1	CDY31813	AT1G62560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030380.1-P	Field mustard	plastid	100.0	100.0
CDX87912	Canola	plastid	96.01	96.01
AT1G52510.1	Thale cress	plastid	87.77	86.84
HORVU2Hr1G114720.10	Barley	cytosol	64.36	73.33
PGSC0003DMT400073443	Potato	plastid	72.07	70.76
KRH47425	Soybean	plastid	70.21	70.59
KRH44482	Soybean	nucleus	70.48	70.48
Solyc06g068220.2.1	Tomato	plastid	71.54	70.23
VIT_09s0002g07500.t01	Wine grape	plastid	69.95	68.67
Os04t0644600-01	Rice	plastid	67.29	64.54
TraesCS2A01G517900.3	Wheat	plastid	65.43	62.44
TraesCS2B01G546500.2	Wheat	plastid	66.49	62.34
TraesCS2D01G519500.2	Wheat	plastid	65.69	61.9
KRH55620	Soybean	cytosol	18.88	60.68
KXG27241	Sorghum	plastid	64.89	60.55
Zm00001d026437_P001	Maize	plastid	44.95	57.88
CDY60486	Canola	plastid	27.93	26.72
CDY39712	Canola	plastid	27.66	26.46

Protein Annotations

EnsemblPlants:CDY49911	EnsemblPlantsGene:GSBRNA2T00094067001	Gene3D:3.40.50.1820	GO:A0A078IIX1	GO:GO:0003674	GO:GO:0003824
InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:Hydrolase_4	InterPro:IPR029058	PANTHER:PTHR43194
PFAM:PF12146	PRINTS:PR00111	PRINTS:PR00412	ProteinID:CDY49911	ProteinID:CDY49911.1	SEG:seg
SUPFAM:SSF53474	UniParc:UPI000254780A	UniProt:A0A078IIX1	MapMan:35.2	:	:

Description

BnaA05g14820DBnaA05g14820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIX1]

Coordinates

chrLK032867:-:81064..82922

Molecular Weight (calculated)

41607.4 Da

IEP (calculated)

8.177

GRAVY (calculated)

-0.299

Length

376 amino acids

Sequence
(BLAST)

001: MPLSLLSPLP LLHSFSPTKS SASRIRATPS RLRLSVVKAT SEKGSSGNVP EDDPSFNPFG FVTDNPSSRS AIQLPESPAE DGNVGQMLYR TEDKGREFGS
101: TIKSGKLRWF VRETGSKESR RGTVVFLHGA PTQSFSYRTV MSEMSEFGFH CYAPDWIGFG FSDKPQPGYG FNYTEKEYHE AFDKLLDTLE IKSPFFLVVQ
201: GFLVGSYGLT WALKNPSKIE KIAILNTPLT VSSPVPGLFK QLRIPLFGEF TCQNAILAER FIEGGSPYVL KNEKADVYRL PYLSSGGPGF ALLETAKKIN
301: FGDTLGQIAN GFSSGSWDKP TLLAWGIADK YLSQSIAEEF EKQNPQNVKL RLIEGAGHLP QEDWPEKVVA ALRSFF

Best Arabidopsis Sequence Match ( AT1G52510.1 )
(BLAST)

001: MSLLSPLPLL HSFSSTVATK STASRITATP SKIRFSVINA TSENGNSGGS KNDRDEDPSF NPFGFVTDNP SSRSAIQLPE SPAEDGNVGQ MLYRTEDKGK
101: EYGSTIKSGK LRWFVRETGS KESRRGTIVF VHGAPTQSFS YRTVMSELSD AGFHCFAPDW IGFGFSDKPQ PGYGFNYTEK EYHEAFDKLL EVLEVKSPFF
201: LVVQGFLVGS YGLTWALKNP SKVEKLAILN SPLTVSSPVP GLFKQLRIPL FGEFTCQNAI LAERFIEGGS PYVLKNEKAD VYRLPYLSSG GPGFALLETA
301: KKINFGDTLS QIANGFSSGS WDKPTLLAWG IADKYLPQSI AEEFEKQNPQ NVKLRLIEGA GHLPQEDWPE KVVAALRAFF

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.