CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY12955
CDY31813

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52510.1	CDY12955	AT1G62560.1	21798944
AT1G52510.1	CDY31813	AT1G62560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030380.1-P	Field mustard	plastid	96.01	96.01
CDY49911	Canola	plastid	96.01	96.01
AT1G52510.1	Thale cress	plastid	86.17	85.26
HORVU2Hr1G114720.10	Barley	cytosol	64.1	73.03
PGSC0003DMT400073443	Potato	plastid	72.07	70.76
Solyc06g068220.2.1	Tomato	plastid	71.54	70.23
KRH47425	Soybean	plastid	69.15	69.52
KRH44482	Soybean	nucleus	68.62	68.62
VIT_09s0002g07500.t01	Wine grape	plastid	68.35	67.1
Os04t0644600-01	Rice	plastid	65.96	63.27
TraesCS2B01G546500.2	Wheat	plastid	66.76	62.59
TraesCS2A01G517900.3	Wheat	plastid	64.89	61.93
TraesCS2D01G519500.2	Wheat	plastid	65.43	61.65
KXG27241	Sorghum	plastid	65.43	61.04
KRH55620	Soybean	cytosol	18.88	60.68
Zm00001d026437_P001	Maize	plastid	44.41	57.19
CDY60486	Canola	plastid	27.66	26.46
CDY39712	Canola	plastid	27.39	26.21

Protein Annotations

EnsemblPlants:CDX87912	EnsemblPlantsGene:GSBRNA2T00147165001	Gene3D:3.40.50.1820	GO:A0A078DFY5	GO:GO:0003674	GO:GO:0003824
InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:Hydrolase_4	InterPro:IPR029058	PANTHER:PTHR43194
PFAM:PF12146	PRINTS:PR00111	PRINTS:PR00412	ProteinID:CDX87912	ProteinID:CDX87912.1	SEG:seg
SUPFAM:SSF53474	UniParc:UPI0004EDF8A7	MapMan:35.2	:	:	:

Description

BnaC06g09740D

Coordinates

chrLK031852:-:1451069..1452932

Molecular Weight (calculated)

41650.5 Da

IEP (calculated)

7.609

GRAVY (calculated)

-0.283

Length

376 amino acids

Sequence
(BLAST)

001: MPLSLLSPLP LLHSFSPTKS TVSRIRATQS RLRLSVVKAT SEKGSSGNVP EDDPSFNPFG FVTDNPSSRS AIQLPESPAE DGNVGQMLYR TEDKGREFGS
101: TIKAGKLRWF VRETGSKESR RGTVVFLHGA PTQSFSYRTV MSEMSEFGFH CYAPDWIGFG FSDKPQPGYG FNYTEKEYHE AFDKLLDTLE IKSPFFLVVQ
201: GFLVGSYGLT WALKNPSKVE KIAILNTPLT VSSPVPGLFK QLRIPLFGEF TCQNAILAER FIEGGSPYVL KNEKADVYRL PYLSSGGPGF ALLETAKKIN
301: FGDTLGQIAN GFSSGSWDKP TLLAWGIVDK YLSQSIAEEF EKQNPQNVKL QLIEGAGHLP QEDWPEKVVA ALRSFF

Best Arabidopsis Sequence Match ( AT1G52510.1 )
(BLAST)

001: MSLLSPLPLL HSFSSTVATK STASRITATP SKIRFSVINA TSENGNSGGS KNDRDEDPSF NPFGFVTDNP SSRSAIQLPE SPAEDGNVGQ MLYRTEDKGK
101: EYGSTIKSGK LRWFVRETGS KESRRGTIVF VHGAPTQSFS YRTVMSELSD AGFHCFAPDW IGFGFSDKPQ PGYGFNYTEK EYHEAFDKLL EVLEVKSPFF
201: LVVQGFLVGS YGLTWALKNP SKVEKLAILN SPLTVSSPVP GLFKQLRIPL FGEFTCQNAI LAERFIEGGS PYVLKNEKAD VYRLPYLSSG GPGFALLETA
301: KKINFGDTLS QIANGFSSGS WDKPTLLAWG IADKYLPQSI AEEFEKQNPQ NVKLRLIEGA GHLPQEDWPE KVVAALRAFF

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.