CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52510.1	KRH28040	AT1G62560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47425	Soybean	plastid	93.62	94.12
KRH55620	Soybean	cytosol	25.8	82.91
VIT_09s0002g07500.t01	Wine grape	plastid	76.06	74.67
PGSC0003DMT400073443	Potato	plastid	74.2	72.85
Solyc06g068220.2.1	Tomato	plastid	73.67	72.32
AT1G52510.1	Thale cress	plastid	72.87	72.11
HORVU2Hr1G114720.10	Barley	cytosol	62.23	70.91
Bra030380.1-P	Field mustard	plastid	70.48	70.48
CDY49911	Canola	plastid	70.48	70.48
CDX87912	Canola	plastid	68.62	68.62
Os04t0644600-01	Rice	plastid	67.55	64.8
TraesCS2A01G517900.3	Wheat	plastid	64.36	61.42
TraesCS2D01G519500.2	Wheat	plastid	65.16	61.4
TraesCS2B01G546500.2	Wheat	plastid	63.83	59.85
KXG27241	Sorghum	plastid	63.83	59.55
Zm00001d026437_P001	Maize	plastid	43.35	55.82
KRH66302	Soybean	plastid	29.79	25.28
KRG88518	Soybean	extracellular, plastid	3.99	10.56

Protein Annotations

EMBL:ACUP02004928	EnsemblPlants:KRH44482	EnsemblPlantsGene:GLYMA_08G213900	EntrezGene:100793646	Gene3D:3.40.50.1820	GO:GO:0003674
GO:GO:0003824	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43194
PFAM:PF12697	PRINTS:PR00111	PRINTS:PR00412	ProteinID:KRH44482	ProteinID:KRH44482.1	SEG:seg
SUPFAM:SSF53474	UniParc:UPI0002338F85	UniProt:I1KVG4	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr8:+:17251992..17261880

Molecular Weight (calculated)

41780.7 Da

IEP (calculated)

9.560

GRAVY (calculated)

-0.260

Length

376 amino acids

Sequence
(BLAST)

001: MVFSAVFTPA LNLAISSTTY CCRRRRTSST TRRVVTVKAN STKKDESKDK DAPAFNPFGF VTDNPSSRSA IQLPENPAED GNVGQMLYRI EDKGKEYGSY
101: VKSGKLRWFV RETGSANGRR GTIIFLHGAP TQSFSYRVVM SQLSDAGFHC FAPDWIGFGF SDKPQPGYGF NYTEKEFHDA LDKLLEVLGV KSPFFLVVQG
201: FLVGSYGLTW ALKNSSKISK LAILNSPLTD SSPIPGLFQK LRIPLYGEFT SQNAIIAERF IEGGSPYVLK NEKADVYRLP YLASSGPGFA LLEAARKANF
301: KGTFSEIAAG FATDRWDKPI LLAWGLSDKY LPQSVAEQFQ KGNPAQIQLK LIEGAGHMPQ EDWPEKVVDT FRVFFF

Best Arabidopsis Sequence Match ( AT1G52510.1 )
(BLAST)

001: MSLLSPLPLL HSFSSTVATK STASRITATP SKIRFSVINA TSENGNSGGS KNDRDEDPSF NPFGFVTDNP SSRSAIQLPE SPAEDGNVGQ MLYRTEDKGK
101: EYGSTIKSGK LRWFVRETGS KESRRGTIVF VHGAPTQSFS YRTVMSELSD AGFHCFAPDW IGFGFSDKPQ PGYGFNYTEK EYHEAFDKLL EVLEVKSPFF
201: LVVQGFLVGS YGLTWALKNP SKVEKLAILN SPLTVSSPVP GLFKQLRIPL FGEFTCQNAI LAERFIEGGS PYVLKNEKAD VYRLPYLSSG GPGFALLETA
301: KKINFGDTLS QIANGFSSGS WDKPTLLAWG IADKYLPQSI AEEFEKQNPQ NVKLRLIEGA GHLPQEDWPE KVVAALRAFF

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.