Factsheet for PGSC0003DMT400073443

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035866
PGSC0003DMT400043245

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52510.1	PGSC0003DMT400035866	AT1G62560.1	21798944
AT1G52510.1	PGSC0003DMT400043245	AT1G62560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068220.2.1	Tomato	plastid	98.69	98.69
VIT_09s0002g07500.t01	Wine grape	plastid	75.46	75.46
KRH47425	Soybean	plastid	73.11	74.87
KRH44482	Soybean	nucleus	72.85	74.2
AT1G52510.1	Thale cress	plastid	72.85	73.42
HORVU2Hr1G114720.10	Barley	cytosol	62.92	73.03
Bra030380.1-P	Field mustard	plastid	70.76	72.07
CDX87912	Canola	plastid	70.76	72.07
CDY49911	Canola	plastid	70.76	72.07
KRH55620	Soybean	cytosol	21.15	69.23
Os04t0644600-01	Rice	plastid	65.54	64.03
TraesCS2A01G517900.3	Wheat	plastid	65.54	63.71
TraesCS2D01G519500.2	Wheat	plastid	65.54	62.91
TraesCS2B01G546500.2	Wheat	plastid	65.54	62.59
KXG27241	Sorghum	plastid	65.8	62.53
Zm00001d026437_P001	Maize	plastid	45.17	59.25
PGSC0003DMT400075010	Potato	plastid	4.18	17.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400073443	EnsemblPlantsGene:PGSC0003DMG400028531	EntrezGene:102600388	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43194	PFAM:PF00561
PGSC:PGSC0003DMG400028531	PRINTS:PR00412	RefSeq:XP_006356226.1	SEG:seg	SUPFAM:SSF53474	UniParc:UPI000296F2D9
UniProt:M1CS07	MapMan:35.2	:	:	:	:

Description

Hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400028531]

Coordinates

chr6:+:49831048..49837417

Molecular Weight (calculated)

42407.3 Da

IEP (calculated)

6.173

GRAVY (calculated)

-0.209

Length

383 amino acids

Sequence
(BLAST)

001: MALSLLSPSP STLCFLASTS SPSAEFTGQF PRLWTNRSRT GPALPVLTRA SSEKDDDKPA FNPFGFVTDN PSSRSAIQMP ESPAEDGNVG QMLYRTEDKG
101: KEYGSYVKSG KFRWFVRETG SPESRRGTIV FLHGAPTQSY SYRVVMSQLS DAGFHCFAPD WIGFGFSDKP QPGYGFDYTE KEFHEEFEKL LEVLGVTSPF
201: FLVVQGFLVG SYGLTWTLKN SSKILKLAIL NTPLTVSSPV PGLFQQLRIP FFGEFTCQNA VMAERFIEAG SAYVLKLEKA DVYRLPYLSS SGPGFALLEA
301: AKKANFSETA SQISSGFAAG SWDKPILVAW GISDKYLPQS IAEEFQKANP RSVELKLIEG AGHMPQEDWP EKVVDALRMF FRI

Best Arabidopsis Sequence Match ( AT1G52510.1 )
(BLAST)

001: MSLLSPLPLL HSFSSTVATK STASRITATP SKIRFSVINA TSENGNSGGS KNDRDEDPSF NPFGFVTDNP SSRSAIQLPE SPAEDGNVGQ MLYRTEDKGK
101: EYGSTIKSGK LRWFVRETGS KESRRGTIVF VHGAPTQSFS YRTVMSELSD AGFHCFAPDW IGFGFSDKPQ PGYGFNYTEK EYHEAFDKLL EVLEVKSPFF
201: LVVQGFLVGS YGLTWALKNP SKVEKLAILN SPLTVSSPVP GLFKQLRIPL FGEFTCQNAI LAERFIEGGS PYVLKNEKAD VYRLPYLSSG GPGFALLETA
301: KKINFGDTLS QIANGFSSGS WDKPTLLAWG IADKYLPQSI AEEFEKQNPQ NVKLRLIEGA GHLPQEDWPE KVVAALRAFF

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.