CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52510.1	KRH28040	AT1G62560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47425	Soybean	plastid	87.18	27.27
KRH44482	Soybean	nucleus	82.91	25.8
VIT_09s0002g07500.t01	Wine grape	plastid	70.94	21.67
Solyc06g068220.2.1	Tomato	plastid	69.23	21.15
PGSC0003DMT400073443	Potato	plastid	69.23	21.15
Zm00001d026437_P001	Maize	plastid	50.43	20.21
HORVU2Hr1G114720.10	Barley	cytosol	55.56	19.7
AT1G52510.1	Thale cress	plastid	62.39	19.21
Bra030380.1-P	Field mustard	plastid	60.68	18.88
CDY49911	Canola	plastid	60.68	18.88
CDX87912	Canola	plastid	60.68	18.88
Os04t0644600-01	Rice	plastid	56.41	16.84
TraesCS2A01G517900.3	Wheat	plastid	55.56	16.5
TraesCS2D01G519500.2	Wheat	plastid	55.56	16.29
TraesCS2B01G546500.2	Wheat	plastid	55.56	16.21
KXG27241	Sorghum	plastid	51.28	14.89
KRH66302	Soybean	plastid	29.06	7.67
KRG88518	Soybean	extracellular, plastid	3.42	2.82

Protein Annotations

EMBL:ACUP02004029	EnsemblPlants:KRH55620	EnsemblPlantsGene:GLYMA_06G267100	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:IPR029058
PANTHER:PTHR43194	ProteinID:KRH55620	ProteinID:KRH55620.1	SUPFAM:SSF53474	UniParc:UPI0006EDC8F7	UniProt:A0A0R0JVY8
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:45513583..45515052

Molecular Weight (calculated)

13432.1 Da

IEP (calculated)

8.182

GRAVY (calculated)

-0.271

Length

117 amino acids

Sequence
(BLAST)

001: MKEFCYVLKN EKADVYRLSY LASSGPGFAA RKANFKGTFS EISAGFTTER FCNLYYIWDK PILLAWGLSD KYLPQSVAEQ FQKGNPAQIQ LKLIEGAGHM
101: PQEDWPEKVV DAFRMFF

Best Arabidopsis Sequence Match ( AT1G52510.1 )
(BLAST)

001: MSLLSPLPLL HSFSSTVATK STASRITATP SKIRFSVINA TSENGNSGGS KNDRDEDPSF NPFGFVTDNP SSRSAIQLPE SPAEDGNVGQ MLYRTEDKGK
101: EYGSTIKSGK LRWFVRETGS KESRRGTIVF VHGAPTQSFS YRTVMSELSD AGFHCFAPDW IGFGFSDKPQ PGYGFNYTEK EYHEAFDKLL EVLEVKSPFF
201: LVVQGFLVGS YGLTWALKNP SKVEKLAILN SPLTVSSPVP GLFKQLRIPL FGEFTCQNAI LAERFIEGGS PYVLKNEKAD VYRLPYLSSG GPGFALLETA
301: KKINFGDTLS QIANGFSSGS WDKPTLLAWG IADKYLPQSI AEEFEKQNPQ NVKLRLIEGA GHLPQEDWPE KVVAALRAFF

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.