Factsheet for Solyc06g068220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g060610.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52510.1	Solyc06g060610.2.1	AT1G62560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073443	Potato	plastid	98.69	98.69
VIT_09s0002g07500.t01	Wine grape	plastid	75.2	75.2
KRH47425	Soybean	plastid	72.58	74.33
KRH44482	Soybean	nucleus	72.32	73.67
AT1G52510.1	Thale cress	plastid	72.58	73.16
HORVU2Hr1G114720.10	Barley	cytosol	62.14	72.12
Bra030380.1-P	Field mustard	plastid	70.23	71.54
CDX87912	Canola	plastid	70.23	71.54
CDY49911	Canola	plastid	70.23	71.54
KRH55620	Soybean	cytosol	21.15	69.23
Os04t0644600-01	Rice	plastid	64.75	63.27
TraesCS2A01G517900.3	Wheat	plastid	64.75	62.94
TraesCS2D01G519500.2	Wheat	plastid	64.75	62.16
TraesCS2B01G546500.2	Wheat	plastid	64.75	61.85
KXG27241	Sorghum	plastid	64.75	61.54
Zm00001d026437_P001	Maize	plastid	44.13	57.88
Solyc09g047900.1.1	Tomato	plastid	26.89	26.82

Protein Annotations

EnsemblPlants:Solyc06g068220.2.1	EnsemblPlantsGene:Solyc06g068220.2	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824	InterPro:AB_hydrolase
InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43194	PFAM:PF00561	PRINTS:PR00111
PRINTS:PR00412	SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002766183	UniProt:K4C7Z7	MapMan:35.2

Description

No Description!

Coordinates

chr6:+:42261088..42267698

Molecular Weight (calculated)

42444.4 Da

IEP (calculated)

6.536

GRAVY (calculated)

-0.212

Length

383 amino acids

Sequence
(BLAST)

001: MALSLLSPSP STLCFLASTS SPSAEFTGQF PRLWTNRSRT GPALPVLTRA SSEKDDNKPA FNPFGFVTDN PSSRSAIQMP ESPAEDGNVG QMLYRTEDKG
101: KEYGSYVKSG KFRWFVRETG SPESRRGTIV FLHGAPTQSY SYRVVMSQLS DAGFHCFAPD WIGFGFSDKP QPGYGFDYTE KEFHEEFEKL LEVLGVTSPF
201: FLVVQGFLVG SYGLTWTLKN PSKILKLAIL NTPLTVSSPI PGLFQQLRIP FFGEFTCQNA VMAERFIEAG SAYVLKLEKA DVYRLPYLSS SGPGFALLEA
301: AKRANFSETA SQISSGFAAG SWDKPILVAW GISDKYLPQS IAEEFQKANP RSVELKLIEG AGHMPQEDWP EKVVDALRMF FRV

Best Arabidopsis Sequence Match ( AT1G52510.1 )
(BLAST)

001: MSLLSPLPLL HSFSSTVATK STASRITATP SKIRFSVINA TSENGNSGGS KNDRDEDPSF NPFGFVTDNP SSRSAIQLPE SPAEDGNVGQ MLYRTEDKGK
101: EYGSTIKSGK LRWFVRETGS KESRRGTIVF VHGAPTQSFS YRTVMSELSD AGFHCFAPDW IGFGFSDKPQ PGYGFNYTEK EYHEAFDKLL EVLEVKSPFF
201: LVVQGFLVGS YGLTWALKNP SKVEKLAILN SPLTVSSPVP GLFKQLRIPL FGEFTCQNAI LAERFIEGGS PYVLKNEKAD VYRLPYLSSG GPGFALLETA
301: KKINFGDTLS QIANGFSSGS WDKPTLLAWG IADKYLPQSI AEEFEKQNPQ NVKLRLIEGA GHLPQEDWPE KVVAALRAFF

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.