CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52510.1	KRH28040	AT1G62560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44482	Soybean	nucleus	94.12	93.62
KRH55620	Soybean	cytosol	27.27	87.18
VIT_09s0002g07500.t01	Wine grape	plastid	75.13	73.37
PGSC0003DMT400073443	Potato	plastid	74.87	73.11
Solyc06g068220.2.1	Tomato	plastid	74.33	72.58
AT1G52510.1	Thale cress	plastid	72.99	71.84
HORVU2Hr1G114720.10	Barley	cytosol	62.3	70.61
Bra030380.1-P	Field mustard	plastid	70.59	70.21
CDY49911	Canola	plastid	70.59	70.21
CDX87912	Canola	plastid	69.52	69.15
Os04t0644600-01	Rice	plastid	68.45	65.31
TraesCS2A01G517900.3	Wheat	plastid	64.97	61.68
TraesCS2D01G519500.2	Wheat	plastid	65.51	61.4
KXG27241	Sorghum	plastid	64.44	59.8
TraesCS2B01G546500.2	Wheat	plastid	63.9	59.6
Zm00001d026437_P001	Maize	plastid	43.32	55.48
KRH66302	Soybean	plastid	29.68	25.06
KRG88518	Soybean	extracellular, plastid	3.74	9.86

Protein Annotations

EMBL:ACUP02004150	EnsemblPlants:KRH47425	EnsemblPlantsGene:GLYMA_07G028900	EntrezGene:100807417	Gene3D:3.40.50.1820	GO:GO:0003674
GO:GO:0003824	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43194
PFAM:PF12697	PRINTS:PR00111	PRINTS:PR00412	ProteinID:KRH47425	ProteinID:KRH47425.1	SEG:seg
SUPFAM:SSF53474	UniParc:UPI00023391B5	UniProt:I1KGZ1	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr7:-:2329597..2334058

Molecular Weight (calculated)

41560.3 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.276

Length

374 amino acids

Sequence
(BLAST)

001: MVFSAVFTPT LNLAISSSTY CCRRRTSSTT RRVVTVRASS TEKDESKDKD ASAFNPFGFV TDNPSSRNAI QLPENPAEDG NVGQMLYRIE DKGKEYGSYV
101: KSGKLRWFVR ETGSANGRRG TIVFLHGAPT QSFSYRVVMS QLSDAGFHCF APDWIGFGFS DKPQPGYGFN YTEKEFHDAL DKLLEVLGVK SPFFLVVQGF
201: LVGSYGLTWA LKNSSKISKL AILNSPLTDS SPIPGLFQKL RIPLYGEFTS QNAIIAERFI EGGSPYVLKN EKADVYRLPY LASSGPGFAL LEAARKANFK
301: GTFSEISAGF TTERWDKPIL LAWGLSDKYL PQSVAEQFQK GNPAQIQLKL IEGAGHMPQE DWPEKVVDAF RMFF

Best Arabidopsis Sequence Match ( AT1G52510.1 )
(BLAST)

001: MSLLSPLPLL HSFSSTVATK STASRITATP SKIRFSVINA TSENGNSGGS KNDRDEDPSF NPFGFVTDNP SSRSAIQLPE SPAEDGNVGQ MLYRTEDKGK
101: EYGSTIKSGK LRWFVRETGS KESRRGTIVF VHGAPTQSFS YRTVMSELSD AGFHCFAPDW IGFGFSDKPQ PGYGFNYTEK EYHEAFDKLL EVLEVKSPFF
201: LVVQGFLVGS YGLTWALKNP SKVEKLAILN SPLTVSSPVP GLFKQLRIPL FGEFTCQNAI LAERFIEGGS PYVLKNEKAD VYRLPYLSSG GPGFALLETA
301: KKINFGDTLS QIANGFSSGS WDKPTLLAWG IADKYLPQSI AEEFEKQNPQ NVKLRLIEGA GHLPQEDWPE KVVAALRAFF

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.