CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032674.1-P	Field mustard	plastid	100.0	100.0
CDY60486	Canola	plastid	98.22	98.22
AT4G12830.1	Thale cress	plastid	89.82	89.82
Zm00001d042346_P001	Maize	plastid	40.97	68.22
Solyc09g047900.1.1	Tomato	plastid	64.89	66.41
VIT_07s0151g00860.t01	Wine grape	plastid	66.41	64.93
Os01t0919700-01	Rice	mitochondrion	61.32	63.59
KRH66302	Soybean	plastid	68.45	60.72
TraesCS3D01G421500.1	Wheat	mitochondrion	58.02	60.64
TraesCS3A01G426600.1	Wheat	mitochondrion	57.51	60.11
GSMUA_Achr10P...	Banana	plastid	55.98	58.05
HORVU3Hr1G093990.1	Barley	cytosol, mitochondrion, plastid	57.76	54.96
TraesCS3B01G462800.1	Wheat	plastid	58.02	53.9
OQU88111	Sorghum	cytosol	58.27	53.26
PGSC0003DMT400075010	Potato	plastid	10.18	42.55
CDY49911	Canola	plastid	26.46	27.66
CDX87912	Canola	plastid	26.21	27.39
KRG88518	Soybean	extracellular, plastid	4.33	11.97

Protein Annotations

EnsemblPlants:CDY39712	EnsemblPlantsGene:GSBRNA2T00068476001	Gene3D:3.40.50.1820	GO:A0A078HPD3	GO:GO:0003674	GO:GO:0003824
InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43329	PANTHER:PTHR43329:SF26
PFAM:PF00561	PRINTS:PR00111	PRINTS:PR00412	ProteinID:CDY39712	ProteinID:CDY39712.1	SEG:seg
SUPFAM:SSF53474	UniParc:UPI000254400B	UniProt:A0A078HPD3	MapMan:35.2	:	:

Description

BnaA04g07230DBnaA04g07230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPD3]

Coordinates

chrLK032455:+:182017..184227

Molecular Weight (calculated)

43604.6 Da

IEP (calculated)

8.128

GRAVY (calculated)

-0.368

Length

393 amino acids

Sequence
(BLAST)

001: MAVHIHNPNF LHTHQLRSSL TSASASPASY HFTRYSPAKH PGFICKSNNK DDYLIDAPVS AGDGFSFSGG KYSDQPSPSD EWLKQGKWVK AHRVGGSGEE
101: AKDPIFGLTM GSSSQASKDV FRWFCVESGK VDSPPVILIH GFPSQAYSYR KALPVLSKNY RAIAFDWLGF GFSDKPQAGY GFNYTLDEYV SSLESFIDEV
201: TTTQVSLVVQ GYFSTAAVKY ARNRPEKIKN LILLNPPLTP EHAKLPSTLS VFSNFLLGEI FSQDPLRASD KPLTSCGPYK MKEDDAMVYR RPYLTSGSSG
301: FALNAISRAM KKELKGYTEE MRSSLMDKDW KIPTTVCWGQ RDKWLSYQGV EEFCKSSGHN LVELPMAGHH VQEDCGEEIG GLISRIISKA ALI

Best Arabidopsis Sequence Match ( AT4G12830.1 )
(BLAST)

001: MAVHIHNPNF FHTHHLRASL TSASASPSSY LFHRHSASKY PSFLCKSNNK DDYLIDAPVS VGDGFSFSGG KYSDQPSPSD EWLKQGKWVK AHRVGGSGVE
101: AKDPIFGLTM GASSQASKDL FRWFSVESGS VDSPPVILIH GFPSQAYSYR KTIPVLSKNY RAIAFDWLGF GFSDKPQAGY GFNYTMDEFV SSLESFIDEV
201: TTSKVSLVVQ GYFSAAVVKY ARNRPDKIKN LILLNPPLTP EHAKLPSTLS VFSNFLLGEI FSQDPLRASD KPLTSCGPYK MKEDDAMVYR RPYLTSGSSG
301: FALNAISRSM KKELKKYAEE MRTSLMDKNW KIPITVCWGQ RDRWLSYEGV EEFCKSSGHN LVELPNAGHH VQEDCGEELG GIISRIISKS ALF

Arabidopsis Description

AT4g12830/T20K18_180 [Source:UniProtKB/TrEMBL;Acc:Q93ZN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.