CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39712	Canola	plastid	98.22	98.22
AT4G12830.1	Thale cress	plastid	89.06	89.06
Zm00001d042346_P001	Maize	plastid	40.2	66.95
Solyc09g047900.1.1	Tomato	plastid	64.38	65.89
VIT_07s0151g00860.t01	Wine grape	plastid	65.9	64.43
Os01t0919700-01	Rice	mitochondrion	60.56	62.8
KRH66302	Soybean	plastid	67.68	60.05
TraesCS3D01G421500.1	Wheat	mitochondrion	56.74	59.31
TraesCS3A01G426600.1	Wheat	mitochondrion	56.23	58.78
GSMUA_Achr10P...	Banana	plastid	55.47	57.52
HORVU3Hr1G093990.1	Barley	cytosol, mitochondrion, plastid	56.74	54.0
TraesCS3B01G462800.1	Wheat	plastid	56.74	52.72
OQU88111	Sorghum	cytosol	57.51	52.56
PGSC0003DMT400075010	Potato	plastid	9.92	41.49
CDY49911	Canola	plastid	26.72	27.93
CDX87912	Canola	plastid	26.46	27.66
KRG88518	Soybean	extracellular, plastid	4.07	11.27

Protein Annotations

EnsemblPlants:CDY60486	EnsemblPlantsGene:GSBRNA2T00029697001	Gene3D:3.40.50.1820	GO:A0A078J3L0	GO:GO:0003674	GO:GO:0003824
InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43329	PANTHER:PTHR43329:SF26
PFAM:PF00561	PRINTS:PR00111	PRINTS:PR00412	ProteinID:CDY60486	ProteinID:CDY60486.1	SEG:seg
SUPFAM:SSF53474	UniParc:UPI0004EDE804	UniProt:A0A078J3L0	MapMan:35.2	:	:

Description

BnaC04g55880DBnaC04g55880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3L0]

Coordinates

chrLK033886:-:19997..22210

Molecular Weight (calculated)

43554.5 Da

IEP (calculated)

7.831

GRAVY (calculated)

-0.378

Length

393 amino acids

Sequence
(BLAST)

001: MAVHIQNPNF LHTHQLRSSL TSASASPASY HFTRYSPAKH PGFICKSNNK DDYLIDAPVS AGDGFSFSGG KYSDQPSPSD EWLKQGKWVK AHRVGGSGEE
101: AKDPIFGLTM GSSSQASKDV FRWFCVESGK VDSPPVILIH GFPSQSYSYR KALPALSKNY RAIAFDWLGF GFSDKPQAGY GFNYTLDEYV SSLESFIDEV
201: TTTQVSLVVQ GYFSTAAVKC ARNRPEKIKN LILLNPPLTP EHAKLPSTLS VFSNFLLGEI FSQDPLRASD KPLTSCGPYK MKEDDAMVYR RPYLTSGSSG
301: FALNAISRAM KKELKGYTEE MRTSLMDKDW KIPTTVCWGQ RDKWLSYQGV EEFCKSSGHD LVELPMAGHH VQEDCGEEIG GLISRIISKS ALI

Best Arabidopsis Sequence Match ( AT4G12830.1 )
(BLAST)

001: MAVHIHNPNF FHTHHLRASL TSASASPSSY LFHRHSASKY PSFLCKSNNK DDYLIDAPVS VGDGFSFSGG KYSDQPSPSD EWLKQGKWVK AHRVGGSGVE
101: AKDPIFGLTM GASSQASKDL FRWFSVESGS VDSPPVILIH GFPSQAYSYR KTIPVLSKNY RAIAFDWLGF GFSDKPQAGY GFNYTMDEFV SSLESFIDEV
201: TTSKVSLVVQ GYFSAAVVKY ARNRPDKIKN LILLNPPLTP EHAKLPSTLS VFSNFLLGEI FSQDPLRASD KPLTSCGPYK MKEDDAMVYR RPYLTSGSSG
301: FALNAISRSM KKELKKYAEE MRTSLMDKNW KIPITVCWGQ RDRWLSYEGV EEFCKSSGHN LVELPNAGHH VQEDCGEELG GIISRIISKS ALF

Arabidopsis Description

AT4g12830/T20K18_180 [Source:UniProtKB/TrEMBL;Acc:Q93ZN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.