Factsheet for Zm00001d042346_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0919700-01	Rice	mitochondrion	85.17	53.03
OQU88111	Sorghum	cytosol	96.19	52.79
TraesCS3D01G421500.1	Wheat	mitochondrion	83.47	52.39
TraesCS3A01G426600.1	Wheat	mitochondrion	82.63	51.86
HORVU3Hr1G093990.1	Barley	cytosol, mitochondrion, plastid	83.05	47.46
TraesCS3B01G462800.1	Wheat	plastid	83.9	46.81
VIT_07s0151g00860.t01	Wine grape	plastid	72.88	42.79
GSMUA_Achr10P...	Banana	plastid	67.37	41.95
Solyc09g047900.1.1	Tomato	plastid	67.37	41.41
Bra032674.1-P	Field mustard	plastid	68.22	40.97
CDY39712	Canola	plastid	68.22	40.97
AT4G12830.1	Thale cress	plastid	67.37	40.46
CDY60486	Canola	plastid	66.95	40.2
KRH66302	Soybean	plastid	69.49	37.02
Zm00001d026437_P001	Maize	plastid	19.49	15.75
KRG88518	Soybean	extracellular, plastid	5.93	9.86
PGSC0003DMT400075010	Potato	plastid	0.85	2.13

Protein Annotations

Gene3D:3.40.50.1820	MapMan:35.2	UniProt:A0A1D6N330	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	GO:GO:0016787	InterPro:IPR029058	ProteinID:ONM35104.1	PFAM:PF00561	PRINTS:PR00111
PANTHER:PTHR43329	PANTHER:PTHR43329:SF26	SUPFAM:SSF53474	UniParc:UPI00084328CA	EnsemblPlantsGene:Zm00001d042346	EnsemblPlants:Zm00001d042346_P001
EnsemblPlants:Zm00001d042346_T001	:	:	:	:	:

Description

alpha/beta-Hydrolases superfamily protein

Coordinates

chr3:-:162351604..162368554

Molecular Weight (calculated)

26618.0 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.191

Length

236 amino acids

Sequence
(BLAST)

001: MPVLADKYHA IAFDWLGFGF SDKPQPKYGF DYTLDEYTSS LEFLVNAVAP DKLSIVVQGY FAPVAVKYAS EHQDKLNHLV LVNPPITDKH LNLPSTLASF
101: SNFLLGEIFS QDPLRASDKV LTSCGPYMMK EEDAMVYRRP YLVSGSSGFA LNAISKAMKK DLKAYIESMR SILRSSSWKT KTTVCWGMRD RWLSYDGVEE
201: FFGGLNQKIV ELPMAGHHVQ EDRGEELGNI IKSILR

Best Arabidopsis Sequence Match ( AT4G12830.1 )
(BLAST)

001: MAVHIHNPNF FHTHHLRASL TSASASPSSY LFHRHSASKY PSFLCKSNNK DDYLIDAPVS VGDGFSFSGG KYSDQPSPSD EWLKQGKWVK AHRVGGSGVE
101: AKDPIFGLTM GASSQASKDL FRWFSVESGS VDSPPVILIH GFPSQAYSYR KTIPVLSKNY RAIAFDWLGF GFSDKPQAGY GFNYTMDEFV SSLESFIDEV
201: TTSKVSLVVQ GYFSAAVVKY ARNRPDKIKN LILLNPPLTP EHAKLPSTLS VFSNFLLGEI FSQDPLRASD KPLTSCGPYK MKEDDAMVYR RPYLTSGSSG
301: FALNAISRSM KKELKKYAEE MRTSLMDKNW KIPITVCWGQ RDRWLSYEGV EEFCKSSGHN LVELPNAGHH VQEDCGEELG GIISRIISKS ALF

Arabidopsis Description

AT4g12830/T20K18_180 [Source:UniProtKB/TrEMBL;Acc:Q93ZN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.