Factsheet for GSMUA_Achr10P05740_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042346_P001	Maize	plastid	41.95	67.37
Os01t0919700-01	Rice	mitochondrion	62.27	62.27
TraesCS3D01G421500.1	Wheat	mitochondrion	59.89	60.37
TraesCS3A01G426600.1	Wheat	mitochondrion	59.63	60.11
VIT_07s0151g00860.t01	Wine grape	plastid	63.32	59.7
Solyc09g047900.1.1	Tomato	plastid	58.31	57.55
Bra032674.1-P	Field mustard	plastid	58.05	55.98
CDY39712	Canola	plastid	58.05	55.98
AT4G12830.1	Thale cress	plastid	57.52	55.47
CDY60486	Canola	plastid	57.52	55.47
HORVU3Hr1G093990.1	Barley	cytosol, mitochondrion, plastid	60.42	55.45
OQU88111	Sorghum	cytosol	62.53	55.12
KRH66302	Soybean	plastid	63.59	54.4
TraesCS3B01G462800.1	Wheat	plastid	60.16	53.9
PGSC0003DMT400075010	Potato	plastid	8.71	35.11
KRG88518	Soybean	extracellular, plastid	5.8	15.49

Protein Annotations

EnsemblPlants:GSMUA_Achr10P05740_001	EnsemblPlants:GSMUA_Achr10T05740_001	EnsemblPlantsGene:GSMUA_Achr10G05740_001	Gene3D:3.40.50.1820	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1
InterPro:IPR029058	PANTHER:PTHR43329	PANTHER:PTHR43329:SF26	PFAM:PF00561	SUPFAM:SSF53474	UniParc:UPI0002948B4A
UniProt:M0RFQ1	MapMan:35.2	:	:	:	:

Description

Putative Haloalkane dehalogenase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G05740_001]

Coordinates

chr10:+:16208180..16216391

Molecular Weight (calculated)

41918.0 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.193

Length

379 amino acids

Sequence
(BLAST)

001: MAALPTFSSA CSLPRSLPVP PARSRRSGFR CGSIFGDNED YYVDEPESAG DGFFFSGGKY SDGPSRSDEW FAQGKMVKAY PVYGGKGKAK DPVFGLTLGA
101: GSQSEADLFR WFCVEAGSSL NPKVILVHGF PSQAYSYRKV LPVLSEDHHA IAFDWLGFGF SDKPQPRYGF DYTLDEYVSA LGSLVDVLVP DKFSLVVQGY
201: FSPVVLKYAS CHQEKLTDLV LINPPLMENH VKLPSSLALF SNFLLGLIIS QDPLSASDRA LTSCGPYMMK EEDAMVYRRP YLTSGSSGFA LNALSGAMKK
301: ELKAYVEAMR TTLASETWKT RTTICWGMRD RWLKYDGVEE FCKASNHKLV ELAMAGHHVQ EDSGEELGRI ISQIISKRK

Best Arabidopsis Sequence Match ( AT4G12830.1 )
(BLAST)

001: MAVHIHNPNF FHTHHLRASL TSASASPSSY LFHRHSASKY PSFLCKSNNK DDYLIDAPVS VGDGFSFSGG KYSDQPSPSD EWLKQGKWVK AHRVGGSGVE
101: AKDPIFGLTM GASSQASKDL FRWFSVESGS VDSPPVILIH GFPSQAYSYR KTIPVLSKNY RAIAFDWLGF GFSDKPQAGY GFNYTMDEFV SSLESFIDEV
201: TTSKVSLVVQ GYFSAAVVKY ARNRPDKIKN LILLNPPLTP EHAKLPSTLS VFSNFLLGEI FSQDPLRASD KPLTSCGPYK MKEDDAMVYR RPYLTSGSSG
301: FALNAISRSM KKELKKYAEE MRTSLMDKNW KIPITVCWGQ RDRWLSYEGV EEFCKSSGHN LVELPNAGHH VQEDCGEELG GIISRIISKS ALF

Arabidopsis Description

AT4g12830/T20K18_180 [Source:UniProtKB/TrEMBL;Acc:Q93ZN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.