Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0042g01070.t01 | |
| VIT_12s0057g01010.t01 | |
| VIT_16s0098g00600.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34720.1 | VIT_16s0098g00600.t01 | AT3G49580.1 | 21798944 |
| AT2G34720.1 | VIT_12s0057g01010.t01 | AT4G14540.1 | 21798944 |
| AT2G34720.1 | VIT_10s0042g01070.t01 | AT4G19700.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11777 | Soybean | nucleus | 74.04 | 75.12 |
| KRH42997 | Soybean | nucleus | 72.6 | 73.3 |
| PGSC0003DMT400030813 | Potato | nucleus | 69.71 | 71.78 |
| KRH36784 | Soybean | nucleus | 73.56 | 69.86 |
| Solyc02g069860.2.1 | Tomato | nucleus | 69.23 | 69.23 |
| PGSC0003DMT400054416 | Potato | nucleus | 68.75 | 68.1 |
| KRH59113 | Soybean | nucleus | 68.75 | 65.9 |
| Bra032395.1-P | Field mustard | nucleus | 55.29 | 62.84 |
| CDY02298 | Canola | nucleus | 54.81 | 62.3 |
| CDY09571 | Canola | nucleus | 54.81 | 62.3 |
| AT1G30500.2 | Thale cress | nucleus | 55.29 | 60.53 |
| AT2G34720.1 | Thale cress | nucleus | 51.92 | 54.55 |
| CDX84285 | Canola | nucleus | 49.52 | 52.55 |
| CDY31636 | Canola | nucleus | 49.04 | 51.78 |
| Bra005397.1-P | Field mustard | nucleus | 49.04 | 51.78 |
| HORVU0Hr1G010230.1 | Barley | nucleus | 38.46 | 50.31 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 55.29 | 49.15 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 52.88 | 48.25 |
| Os12t0613000-01 | Rice | nucleus | 49.04 | 47.0 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 51.44 | 45.73 |
| TraesCS5A01G043300.2 | Wheat | nucleus | 46.15 | 45.71 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 46.15 | 45.5 |
| Os08t0196700-01 | Rice | nucleus | 41.83 | 45.08 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 44.23 | 44.44 |
| EES17387 | Sorghum | nucleus | 45.19 | 44.13 |
| HORVU5Hr1G010600.10 | Barley | nucleus | 45.19 | 43.93 |
| Zm00001d041491_P001 | Maize | nucleus | 41.83 | 30.1 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 38.94 | 26.47 |
| VIT_08s0007g08250.t01 | Wine grape | nucleus | 43.27 | 25.42 |
| VIT_13s0064g00860.t01 | Wine grape | nucleus | 40.87 | 20.99 |
| VIT_08s0032g01190.t01 | Wine grape | nucleus | 31.73 | 20.12 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 31.73 | 19.64 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 36.54 | 18.86 |
Protein Annotations
| EntrezGene:100249692 | wikigene:100249692 | MapMan:15.5.51.1 | ProteinID:CBI30998 | ProteinID:CBI30998.3 | InterPro:CCAAT-binding_factor_CS |
| UniProt:D7TKH6 | EMBL:FN595992 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015074 | GO:GO:0016602 | InterPro:IPR001289 | EntrezGene:LOC100249692 | wikigene:LOC100249692 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF18 | SMART:SM00521 | TIGR:TC63156 | TIGR:TC67850 | UniParc:UPI000198418E | ArrayExpress:VIT_10s0003g04650 |
| EnsemblPlantsGene:VIT_10s0003g04650 | EnsemblPlants:VIT_10s0003g04650.t01 | unigene:Vvi.6356 | RefSeq:XP_002282043 | RefSeq:XP_002282043.1 | RefSeq:XP_010655736.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:8293172..8310659
Molecular Weight (calculated)
22649.1 Da
IEP (calculated)
7.867
GRAVY (calculated)
-0.848
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSVHDLSD NSEADEPQKH SELQVQSSSP AAGASHPGSA AANIPYATPP QLGAGHAMAQ AAYPYPDPYY RSIFAPYDAQ PYPAQHYSGQ PMVHLQLMGI
101: QQAGVPLPSD AVEEPVFVNA KQYHGILRRR QSRAKAESEN KVVKSRKPYL HESRHLHALR RARGCGGRFL NSKKNESEQN EVASGDKSQS NINLNSDKNE
201: LASSDSTS
101: QQAGVPLPSD AVEEPVFVNA KQYHGILRRR QSRAKAESEN KVVKSRKPYL HESRHLHALR RARGCGGRFL NSKKNESEQN EVASGDKSQS NINLNSDKNE
201: LASSDSTS
001: MTSSIHELSD NIGSHEKQEQ RDSHFQPPIP SARNYESIVT SLVYSDPGTT NSMAPGQYPY PDPYYRSIFA PPPQPYTGVH LQLMGVQQQG VPLPSDAVEE
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
Arabidopsis Description
NFYA7Nuclear transcription factor Y subunit A-7 [Source:UniProtKB/Swiss-Prot;Acc:Q84JP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.