Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005397.1-P | Field mustard | nucleus | 88.38 | 88.83 |
| CDY31636 | Canola | nucleus | 88.38 | 88.83 |
| CDX84285 | Canola | nucleus | 87.88 | 88.78 |
| AT1G30500.2 | Thale cress | nucleus | 64.65 | 67.37 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 54.55 | 51.92 |
| KRH42997 | Soybean | nucleus | 52.02 | 50.0 |
| KRH11777 | Soybean | nucleus | 51.52 | 49.76 |
| PGSC0003DMT400030813 | Potato | nucleus | 50.0 | 49.01 |
| Solyc02g069860.2.1 | Tomato | nucleus | 51.01 | 48.56 |
| KRH36784 | Soybean | nucleus | 52.02 | 47.03 |
| PGSC0003DMT400054416 | Potato | nucleus | 49.49 | 46.67 |
| KRH59113 | Soybean | nucleus | 50.0 | 45.62 |
| HORVU0Hr1G010230.1 | Barley | nucleus | 32.32 | 40.25 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 45.45 | 38.46 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 43.43 | 37.72 |
| Os08t0196700-01 | Rice | nucleus | 35.35 | 36.27 |
| EES17387 | Sorghum | nucleus | 38.38 | 35.68 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 41.92 | 35.47 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 36.36 | 34.78 |
| TraesCS5A01G043300.2 | Wheat | nucleus | 36.87 | 34.76 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 36.87 | 34.6 |
| Os12t0613000-01 | Rice | nucleus | 37.37 | 34.1 |
| HORVU5Hr1G010600.10 | Barley | nucleus | 36.36 | 33.64 |
| Zm00001d041491_P001 | Maize | nucleus | 36.36 | 24.91 |
| AT5G12840.3 | Thale cress | nucleus | 29.8 | 21.69 |
| AT3G20910.1 | Thale cress | nucleus | 31.82 | 20.79 |
| AT1G17590.3 | Thale cress | nucleus | 32.32 | 19.51 |
| AT1G54160.1 | Thale cress | nucleus | 30.3 | 19.48 |
| AT5G06510.2 | Thale cress | nucleus | 26.26 | 19.33 |
| AT3G14020.1 | Thale cress | nucleus | 29.8 | 19.16 |
| AT1G72830.2 | Thale cress | nucleus | 32.32 | 18.77 |
| AT3G05690.2 | Thale cress | mitochondrion | 28.28 | 16.87 |
Protein Annotations
| MapMan:15.5.51.1 | EntrezGene:818037 | UniProt:A0A178VWS5 | ProteinID:AAC16262.1 | ProteinID:AEC09013.1 | ArrayExpress:AT2G34720 |
| EnsemblPlantsGene:AT2G34720 | RefSeq:AT2G34720 | TAIR:AT2G34720 | RefSeq:AT2G34720-TAIR-G | EnsemblPlants:AT2G34720.1 | TAIR:AT2G34720.1 |
| EMBL:AY072414 | EMBL:AY114711 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | GO:GO:0045892 | GO:GO:0048510 | InterPro:IPR001289 |
| Symbol:NF-YA4 | InterPro:NFYA | RefSeq:NP_850235.1 | ProteinID:OAP10328.1 | PFAM:PF02045 | PO:PO:0000293 |
| PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF29 | UniProt:Q8VY64 |
| SMART:SM00521 | UniParc:UPI00000A62C8 | : | : | : | : |
Description
NFYA4Nuclear transcription factor Y subunit A-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY64]
Coordinates
chr2:-:14649706..14651709
Molecular Weight (calculated)
22260.0 Da
IEP (calculated)
9.269
GRAVY (calculated)
-1.066
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSVHELSD NNESHAKKER PDSQTRPQVP SGRSSESIDT NSVYSEPMAH GLYPYPDPYY RSVFAQQAYL PHPYPGVQLQ LMGMQQPGVP LQCDAVEEPV
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKAK KPYMHESRHL HAIRRPRGCG GRFLNAKKEN GDHKEEEEAT SDENTSEASS SLRSEKLAMA TSGPNGRS
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKAK KPYMHESRHL HAIRRPRGCG GRFLNAKKEN GDHKEEEEAT SDENTSEASS SLRSEKLAMA TSGPNGRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.