Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054416 | Potato | nucleus | 77.72 | 74.76 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 71.78 | 69.71 |
| KRH42997 | Soybean | nucleus | 62.38 | 61.16 |
| KRH11777 | Soybean | nucleus | 61.39 | 60.49 |
| AT1G30500.2 | Thale cress | nucleus | 53.47 | 56.84 |
| KRH59113 | Soybean | nucleus | 60.89 | 56.68 |
| KRH36784 | Soybean | nucleus | 60.89 | 56.16 |
| Bra032395.1-P | Field mustard | nucleus | 49.51 | 54.64 |
| CDY02298 | Canola | nucleus | 49.01 | 54.1 |
| CDY09571 | Canola | nucleus | 49.01 | 54.1 |
| AT2G34720.1 | Thale cress | nucleus | 49.01 | 50.0 |
| HORVU0Hr1G010230.1 | Barley | nucleus | 37.62 | 47.8 |
| CDX84285 | Canola | nucleus | 46.04 | 47.45 |
| CDY31636 | Canola | nucleus | 46.04 | 47.21 |
| Bra005397.1-P | Field mustard | nucleus | 46.04 | 47.21 |
| Os12t0613000-01 | Rice | nucleus | 45.05 | 41.94 |
| TraesCS5A01G043300.2 | Wheat | nucleus | 43.56 | 41.9 |
| EES17387 | Sorghum | nucleus | 44.06 | 41.78 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 43.56 | 41.71 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 47.03 | 41.67 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 48.02 | 41.45 |
| Os08t0196700-01 | Rice | nucleus | 39.11 | 40.93 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 47.03 | 40.6 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 41.58 | 40.58 |
| HORVU5Hr1G010600.10 | Barley | nucleus | 42.08 | 39.72 |
| Zm00001d041491_P001 | Maize | nucleus | 41.58 | 29.07 |
| PGSC0003DMT400021053 | Potato | nucleus | 30.2 | 25.42 |
| PGSC0003DMT400006358 | Potato | nucleus | 35.15 | 25.09 |
| PGSC0003DMT400027785 | Potato | nucleus | 37.62 | 24.52 |
| PGSC0003DMT400017698 | Potato | nucleus | 36.63 | 24.42 |
| PGSC0003DMT400072322 | Potato | nucleus | 23.27 | 23.98 |
| PGSC0003DMT400055982 | Potato | nucleus | 25.25 | 23.61 |
| PGSC0003DMT400018959 | Potato | nucleus | 34.16 | 23.0 |
| PGSC0003DMT400000740 | Potato | nucleus | 32.67 | 21.93 |
| PGSC0003DMT400055061 | Potato | nucleus | 30.2 | 19.61 |
Protein Annotations
| EntrezGene:102579930 | MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016602 | InterPro:IPR001289 | UniProt:M1AUU3 | InterPro:NFYA | PFAM:PF02045 | EnsemblPlantsGene:PGSC0003DMG400011806 |
| PGSC:PGSC0003DMG400011806 | EnsemblPlants:PGSC0003DMT400030813 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF18 | SMART:SM00521 | UniParc:UPI000295F89A | RefSeq:XP_006363651.1 | RefSeq:XP_006363652.1 | SEG:seg |
Description
Nuclear transcription factor Y subunit A-4 [Source:PGSC_GENE;Acc:PGSC0003DMG400011806]
Coordinates
chr2:-:13841649..13847606
Molecular Weight (calculated)
22578.4 Da
IEP (calculated)
8.207
GRAVY (calculated)
-0.890
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSIHDLSD NCENEQPQKQ SEMQSRSSSP AAELSVPGTV PPDMHYLIPS QLRNADAMAQ TAYPYPDPYY RSIFAPYDAQ PYPAQPYPAQ SMVRLQLMGI
101: QQAGVPLPSD VAEEPVFVNA KQYHGILRRR QSRAKAESEN KLLKARKPYL HESRHLHALR RARGCGGRFM TAKEKDESDD KSKANANTDS NKIEVTSSEN
201: AS
101: QQAGVPLPSD VAEEPVFVNA KQYHGILRRR QSRAKAESEN KLLKARKPYL HESRHLHALR RARGCGGRFM TAKEKDESDD KSKANANTDS NKIEVTSSEN
201: AS
001: MTSSIHELSD NIGSHEKQEQ RDSHFQPPIP SARNYESIVT SLVYSDPGTT NSMAPGQYPY PDPYYRSIFA PPPQPYTGVH LQLMGVQQQG VPLPSDAVEE
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
Arabidopsis Description
NFYA7Nuclear transcription factor Y subunit A-7 [Source:UniProtKB/Swiss-Prot;Acc:Q84JP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.