Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g081840.1.1 | Tomato | nucleus | 64.8 | 82.47 |
| PGSC0003DMT400055061 | Potato | nucleus | 59.18 | 37.3 |
| GSMUA_Achr7P07860_001 | Banana | nucleus | 37.76 | 36.82 |
| CDY05192 | Canola | nucleus | 30.61 | 33.52 |
| VIT_08s0032g01190.t01 | Wine grape | nucleus | 48.98 | 29.27 |
| KRH68018 | Soybean | nucleus | 47.45 | 28.35 |
| KRH72156 | Soybean | nucleus | 45.41 | 26.57 |
| AT5G06510.2 | Thale cress | nucleus | 35.71 | 26.02 |
| KRG96274 | Soybean | endoplasmic reticulum, extracellular, vacuole | 45.41 | 25.72 |
| CDY18809 | Canola | nucleus | 35.71 | 25.55 |
| CDY14662 | Canola | nucleus | 36.22 | 25.27 |
| CDX74133 | Canola | nucleus | 36.22 | 25.27 |
| CDX98930 | Canola | nucleus | 34.18 | 25.09 |
| Bra001164.1-P | Field mustard | nucleus | 35.71 | 24.91 |
| Bra040529.1-P | Field mustard | nucleus | 35.71 | 24.91 |
| CDX70098 | Canola | nucleus | 33.16 | 24.34 |
| Bra009200.1-P | Field mustard | nucleus | 33.16 | 24.34 |
| PGSC0003DMT400054416 | Potato | nucleus | 26.02 | 24.29 |
| KRH32866 | Soybean | nucleus | 40.31 | 24.16 |
| TraesCS5A01G373500.1 | Wheat | nucleus | 38.78 | 23.31 |
| PGSC0003DMT400030813 | Potato | nucleus | 23.98 | 23.27 |
| GSMUA_Achr4P31420_001 | Banana | mitochondrion, nucleus | 39.8 | 23.15 |
| TraesCS5B01G375500.1 | Wheat | nucleus | 37.76 | 22.91 |
| TraesCS5B01G028500.1 | Wheat | nucleus | 39.29 | 22.71 |
| AT3G05690.2 | Thale cress | mitochondrion | 38.27 | 22.59 |
| TraesCS5A01G029900.1 | Wheat | nucleus | 39.29 | 22.58 |
| TraesCS5D01G037800.1 | Wheat | nucleus | 39.29 | 22.51 |
| Os12t0618600-01 | Rice | nucleus | 35.71 | 22.51 |
| TraesCS5D01G383000.1 | Wheat | nucleus | 37.24 | 22.46 |
| GSMUA_Achr4P28390_001 | Banana | nucleus | 36.73 | 22.36 |
| HORVU5Hr1G007890.1 | Barley | nucleus | 38.78 | 22.29 |
| Zm00001d031092_P001 | Maize | nucleus | 37.24 | 22.12 |
| KXG37939 | Sorghum | nucleus | 38.78 | 22.03 |
| PGSC0003DMT400021053 | Potato | nucleus | 26.53 | 21.67 |
| GSMUA_Achr5P02590_001 | Banana | nucleus | 35.71 | 21.6 |
| Zm00001d033215_P001 | Maize | nucleus | 35.2 | 21.43 |
| Zm00001d013676_P002 | Maize | nucleus | 36.73 | 21.11 |
| PGSC0003DMT400055982 | Potato | nucleus | 22.96 | 20.83 |
| Os03t0647600-01 | Rice | nucleus | 37.24 | 20.62 |
| HORVU5Hr1G092700.5 | Barley | nucleus | 37.76 | 18.97 |
| PGSC0003DMT400006358 | Potato | nucleus | 26.53 | 18.37 |
| Zm00001d007882_P001 | Maize | nucleus | 26.53 | 17.69 |
| OQU79642 | Sorghum | plastid | 37.24 | 17.42 |
| PGSC0003DMT400017698 | Potato | nucleus | 25.51 | 16.5 |
| OQU88458 | Sorghum | nucleus | 26.53 | 16.1 |
| Os07t0158500-00 | Rice | nucleus | 30.61 | 15.83 |
| PGSC0003DMT400027785 | Potato | nucleus | 24.49 | 15.48 |
| PGSC0003DMT400018959 | Potato | nucleus | 21.94 | 14.33 |
| PGSC0003DMT400000740 | Potato | nucleus | 21.43 | 13.95 |
Protein Annotations
| EntrezGene:102587642 | MapMan:15.5.51.1 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 | UniProt:M1CQ29 |
| InterPro:NFYA | PFAM:PF02045 | EnsemblPlantsGene:PGSC0003DMG400028144 | PGSC:PGSC0003DMG400028144 | EnsemblPlants:PGSC0003DMT400072322 | PRINTS:PR00616 |
| PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF7 | SMART:SM00521 | UniParc:UPI0002949D8A | RefSeq:XP_006339173.1 |
| RefSeq:XP_015165468.1 | : | : | : | : | : |
Description
YA1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028144]
Coordinates
chr10:-:56173559..56175899
Molecular Weight (calculated)
22064.1 Da
IEP (calculated)
10.062
GRAVY (calculated)
-0.747
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQPMSSDSH ESGVSMQSYN MDYQGHFDLG LFGQSLGRIM LPLNLTSHDE SPIFVNAKQY HGILRRRKFR AKEMEKNLLK PRKPFLHLSR HLHAKSRPRG
101: GGGRFLNTRK TNGSINDDAN GTTKTSNKKC HHTISQNSEV LQSDVFNFNS TKETTNNMSS IEAFLDTTNT GHDILMASKW GSAAAVDSYC CRNLKI
101: GGGRFLNTRK TNGSINDDAN GTTKTSNKKC HHTISQNSEV LQSDVFNFNS TKETTNNMSS IEAFLDTTNT GHDILMASKW GSAAAVDSYC CRNLKI
001: MYTKHPHVEQ YYGVVSAYGS QRSSGRVMIP LKMETEEDGT IYVNSKQYHG IIRRRQSRAK AEKLSRCRKP YMHHSRHLHA MRRPRGSGGR FLNTKTADAA
101: KQSKPSNSQS SEVFHPENET INSSREANES NLSDSAVTSM DYFLSSSAYS PGGMVMPIKW NAAAMDIGCC KLNI
101: KQSKPSNSQS SEVFHPENET INSSREANES NLSDSAVTSM DYFLSSSAYS PGGMVMPIKW NAAAMDIGCC KLNI
Arabidopsis Description
NFYA10NF-YA10 [Source:UniProtKB/TrEMBL;Acc:A0A178URE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.