CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031092_P001	Maize	nucleus	65.63	83.33
Os12t0618600-01	Rice	nucleus	48.45	65.27
TraesCS5D01G037800.1	Wheat	nucleus	52.51	64.33
TraesCS5B01G028500.1	Wheat	nucleus	52.03	64.31
TraesCS5A01G029900.1	Wheat	nucleus	52.03	63.93
HORVU5Hr1G007890.1	Barley	nucleus	51.31	63.05
KXG37939	Sorghum	nucleus	43.2	52.46
Solyc10g081840.1.1	Tomato	nucleus	15.04	40.91
CDY05192	Canola	nucleus	17.18	40.22
PGSC0003DMT400072322	Potato	nucleus	17.42	37.24
VIT_08s0032g01190.t01	Wine grape	nucleus	28.16	35.98
AT5G06510.2	Thale cress	nucleus	22.67	35.32
KRH72156	Soybean	nucleus	27.92	34.93
CDY18809	Canola	nucleus	22.67	34.67
KRH68018	Soybean	nucleus	26.97	34.45
PGSC0003DMT400055061	Potato	nucleus	25.3	34.08
CDX70098	Canola	nucleus	21.72	34.08
Bra009200.1-P	Field mustard	nucleus	21.72	34.08
KRH32866	Soybean	nucleus	26.49	33.95
Bra040529.1-P	Field mustard	nucleus	22.67	33.81
Solyc01g006930.2.1	Tomato	nucleus	24.82	33.44
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	26.97	32.66
CDY14662	Canola	nucleus	21.72	32.38
CDX74133	Canola	nucleus	21.72	32.38
CDX98930	Canola	nucleus	20.53	32.21
Bra001164.1-P	Field mustard	nucleus	21.48	32.03
AT3G05690.2	Thale cress	mitochondrion	24.82	31.33
KXG37797	Sorghum	nucleus	18.85	29.59
EER92762	Sorghum	nucleus	16.95	28.63
EES17387	Sorghum	nucleus	14.32	28.17
OQU88458	Sorghum	nucleus	21.48	27.86
EER94699	Sorghum	nucleus	17.18	23.3
OQU85816	Sorghum	nucleus	16.71	23.03
EER99688	Sorghum	nucleus	16.47	22.92

Protein Annotations

MapMan:15.5.51.1	UniProt:A0A1Z5R770	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016602	InterPro:IPR001289	InterPro:NFYA	EnsemblPlants:OQU79642	ProteinID:OQU79642	ProteinID:OQU79642.1
PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF17
SMART:SM00521	EnsemblPlantsGene:SORBI_3008G174650	UniParc:UPI000B4266B2	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:60894984..60900758

Molecular Weight (calculated)

45475.0 Da

IEP (calculated)

9.720

GRAVY (calculated)

-0.369

Length

419 amino acids

Sequence
(BLAST)

001: MFPFLPFLSS SILNPHCFNQ SPLNKPFFLR SNSFSQFHSL SPLLQPASSY SSSWVVVRLG TVPSPTSLVN VASTSTSKTS KMMSFRSTTH DGFVGHAAVN
101: GAGAPVPWWA GAPMLCGEPL GLGRPVVAAF SPEDHCRDGR FQVLQGPPLD PLVPSLKAPV AHQQQTEKGL SAELLNLSVA HQGKGKKGSE HSATVALQSP
201: FAIYNGRFEL GLGQSMISAD NSYADQHYGL ISPYPMGATP GGRMLIPLNM PTEAPIYVNA KQYDAIMRRR RARAKAEREN RLVKARKPYL HESRHQHALR
301: RPRGSGGRFL NTKKESDGKD AGGGSKATFS NPLMRQVASP SSEIQHSDLG NPSSVSSLSG SEVSSMYDRE DMDHYHSFDH LRTPFFTPLT SIMDGDHGVV
401: GNPFKWAAAS EVCCDLLKA

Best Arabidopsis Sequence Match ( AT5G06510.3 )
(BLAST)

001: MQMFEGDFIY AVIDLGGEKS SRDVPKPHVA FAMQSACFEF GFAQPMMYTK HPHVEQYYGV VSAYGSQRSS GRVMIPLKME TEEDGTIYVN SKQYHGIIRR
101: RQSRAKAEKL SRCRKPYMHH SRHLHAMRRP RGSGGRFLNT KTADAAKQSK PSNSQSSEVF HPENETINSS REANESNLSD SAVTSMDYFL SSSAYSPGGM
201: VMPIKWNAAA MDIGCCKLNI

Arabidopsis Description

NFYA10NF-YA10 [Source:UniProtKB/TrEMBL;Acc:A0A178URE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.