CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007882_P001	Maize	nucleus	61.3	67.35
GSMUA_Achr7P07860_001	Banana	nucleus	23.53	37.81
Os07t0158500-00	Rice	nucleus	40.87	34.83
Solyc10g081840.1.1	Tomato	nucleus	15.17	31.82
CDY05192	Canola	nucleus	17.03	30.73
GSMUA_Achr4P28390_001	Banana	nucleus	28.17	28.26
KXG37939	Sorghum	nucleus	28.48	26.67
PGSC0003DMT400072322	Potato	nucleus	16.1	26.53
AT5G06510.2	Thale cress	nucleus	21.67	26.02
GSMUA_Achr5P02590_001	Banana	nucleus	26.01	25.93
GSMUA_Achr4P31420_001	Banana	mitochondrion, nucleus	26.93	25.82
EES17387	Sorghum	nucleus	16.72	25.35
CDX98930	Canola	nucleus	20.74	25.09
CDY18809	Canola	nucleus	20.74	24.45
PGSC0003DMT400055061	Potato	nucleus	23.22	24.12
Bra009200.1-P	Field mustard	nucleus	19.81	23.97
CDX70098	Canola	nucleus	19.81	23.97
Bra040529.1-P	Field mustard	nucleus	20.74	23.84
Bra001164.1-P	Field mustard	nucleus	20.43	23.49
Solyc01g006930.2.1	Tomato	nucleus	22.29	23.15
CDX74133	Canola	nucleus	20.12	23.13
CDY14662	Canola	nucleus	20.12	23.13
KRH72156	Soybean	nucleus	23.84	22.99
EER92762	Sorghum	nucleus	17.65	22.98
VIT_08s0032g01190.t01	Wine grape	nucleus	23.22	22.87
KXG37797	Sorghum	nucleus	18.89	22.85
KRH32866	Soybean	nucleus	22.91	22.63
KRH68018	Soybean	nucleus	22.29	21.95
OQU79642	Sorghum	plastid	27.86	21.48
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	22.29	20.81
AT3G05690.2	Thale cress	mitochondrion	20.43	19.88
OQU85816	Sorghum	nucleus	17.65	18.75
EER99688	Sorghum	nucleus	16.72	17.94
EER94699	Sorghum	nucleus	16.41	17.15

Protein Annotations

MapMan:15.5.51.1	EntrezGene:8086423	UniProt:A0A1W0W234	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001289
InterPro:NFYA	EnsemblPlants:OQU88458	ProteinID:OQU88458	ProteinID:OQU88458.1	PFAM:PF02045	PRINTS:PR00616
PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF8	SMART:SM00521	EnsemblPlantsGene:SORBI_3002G038500	UniParc:UPI0009DC8279
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:3760377..3764313

Molecular Weight (calculated)

34780.2 Da

IEP (calculated)

10.022

GRAVY (calculated)

-0.468

Length

323 amino acids

Sequence
(BLAST)

001: MRSAFQDHGL GFHQAITDGG GGGAGPATTA APWWAAAPHQ GCAAARFPII SSSSVSGDPD PRRHELKFHE PPGAAAMAAA AHPELLLHKY HHGRFDLSIG
101: QSMMFSTNAI PDHHSYGTAS YYPFYGAHAL VCICHTDPFC LGCFSTRLVS HHSIYFYICK KKKKMKHGRV LLPPAIAADE PVYVNAKQFN GILRRRLARA
201: KAACRDRRVS GGNRRKPYMH ESRHLHALRR ARGTGGRFLN TRSRDDGDPH KPPNEGSAAS NKAKAKAAAA AATRLQQQED RQADALFLSS LVNVAGGDGD
301: GGEATAWPGC SAPSRGCCDL LRS

Best Arabidopsis Sequence Match ( AT2G34720.2 )
(BLAST)

001: MIRFLFLCVL VLKAHGLYPY PDPYYRSVFA QQAYLPHPYP GVQLQLMGMQ QPGVPLQCDA VEEPVFVNAK QYHGILRRRQ SRAKLEARNR AIKAKKPYMH
101: ESRHLHAIRR PRGCGGRFLN AKKENGDHKE EEEATSDENT SEASSSLRSE KLAMATSGPN GRS

Arabidopsis Description

NFYA4Nuclear transcription factor Y subunit A-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY64]
SUBAcon: [golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.