CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033215_P001	Maize	nucleus	83.19	89.13
Zm00001d013676_P002	Maize	nucleus	83.77	84.75
TraesCS5D01G383000.1	Wheat	nucleus	61.74	65.54
TraesCS5A01G373500.1	Wheat	nucleus	61.74	65.34
TraesCS5B01G375500.1	Wheat	nucleus	60.0	64.09
Os03t0647600-01	Rice	nucleus	60.58	59.04
HORVU5Hr1G092700.5	Barley	nucleus	61.74	54.62
Solyc10g081840.1.1	Tomato	nucleus	19.42	43.51
OQU79642	Sorghum	plastid	52.46	43.2
PGSC0003DMT400072322	Potato	nucleus	22.03	38.78
CDY05192	Canola	nucleus	19.42	37.43
VIT_08s0032g01190.t01	Wine grape	nucleus	35.36	37.2
AT5G06510.2	Thale cress	nucleus	27.25	34.94
Solyc01g006930.2.1	Tomato	nucleus	31.01	34.41
PGSC0003DMT400055061	Potato	nucleus	30.72	34.08
CDX70098	Canola	nucleus	26.09	33.71
Bra009200.1-P	Field mustard	nucleus	26.09	33.71
KRH72156	Soybean	nucleus	32.46	33.43
KRH68018	Soybean	nucleus	31.3	32.93
CDX98930	Canola	nucleus	24.64	31.84
CDY18809	Canola	nucleus	25.22	31.75
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	31.59	31.5
KRH32866	Soybean	nucleus	29.86	31.5
Bra001164.1-P	Field mustard	nucleus	25.51	31.32
CDX74133	Canola	nucleus	25.51	31.32
CDY14662	Canola	nucleus	25.51	31.32
Bra040529.1-P	Field mustard	nucleus	25.22	30.96
EER92762	Sorghum	nucleus	21.16	29.44
KXG37797	Sorghum	nucleus	22.61	29.21
OQU88458	Sorghum	nucleus	26.67	28.48
EES17387	Sorghum	nucleus	17.1	27.7
AT3G05690.2	Thale cress	mitochondrion	25.51	26.51
EER99688	Sorghum	nucleus	22.03	25.25
EER94699	Sorghum	nucleus	22.32	24.92
OQU85816	Sorghum	nucleus	21.74	24.67

Protein Annotations

MapMan:15.5.51.1	UniProt:A0A1B6QJ65	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001289	EnsemblPlants:KXG37939
ProteinID:KXG37939	ProteinID:KXG37939.1	InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616	PFscan:PS51152
PANTHER:PTHR12632	PANTHER:PTHR12632:SF17	SMART:SM00521	EnsemblPlantsGene:SORBI_3001G154500	UniParc:UPI00081AE7A8	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:12411740..12416657

Molecular Weight (calculated)

36521.3 Da

IEP (calculated)

9.811

GRAVY (calculated)

-0.524

Length

345 amino acids

Sequence
(BLAST)

001: MMSFKGHEGF GGQVSAATGA GSQVAASHGA AAAGAGPLPW WAGPQLLFGE PAPLSPEETR RDSQFQVVPG AQGTPPDPAP PKRGTPEVLK FSVFQGNLES
101: GGKGEKNPKN STTIALQSPF PEYNGRFEIG LGQSMMVPSN YSCADQCYGM LTTYGMKSMS GGRMLLPLNA PADAPIYVNP KQYEGILRRR RARAKAESEN
201: RLAKGRKPYL HESRHLHAMR RVRGSGGRFL NTKKEGGHGT DVDANGGSKM AAAAPSRLTM PPSSEPPRPP GLSNISNPHF HSQSSVSSLS GSDVSNIYGG
301: LEQPPRAPPF FTVLPPIMDG DHGGVTHISS FKWAASDSCC ELLKA

Best Arabidopsis Sequence Match ( AT5G06510.3 )
(BLAST)

001: MQMFEGDFIY AVIDLGGEKS SRDVPKPHVA FAMQSACFEF GFAQPMMYTK HPHVEQYYGV VSAYGSQRSS GRVMIPLKME TEEDGTIYVN SKQYHGIIRR
101: RQSRAKAEKL SRCRKPYMHH SRHLHAMRRP RGSGGRFLNT KTADAAKQSK PSNSQSSEVF HPENETINSS REANESNLSD SAVTSMDYFL SSSAYSPGGM
201: VMPIKWNAAA MDIGCCKLNI

Arabidopsis Description

NFYA10NF-YA10 [Source:UniProtKB/TrEMBL;Acc:A0A178URE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.